HHSEARCH alignment of GI: 254780330 and SCOP domain: d2uubr1

Alignment
>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]}
Probab=99.91  E-value=1.6e-25  Score=161.57  Aligned_cols=64  Identities=42%  Similarity=0.647  Sum_probs=59.2

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             8854350388511446889999962899848550331748999999999999999704658676
Q gi|254780330|r   19 KSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGLIAYVN   82 (83)
Q Consensus        19 k~c~~~~~~~~~iDYKn~~lL~~Fis~~GkI~prr~TG~~~k~Qr~i~~aIKrAR~~gLlPy~~   82 (83)
                      +.|..+..+++.+||||+++|++||||+|+|+||++||+|++|||+|++|||+||+||||||++
T Consensus         2 ~k~k~~~~~~~~iDYKn~~lL~~Fis~~GkIlprr~TGl~~k~Qr~l~~aIkrAR~~gLlPy~~   65 (70)
T d2uubr1           2 AKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTE   65 (70)
T ss_dssp             CCTTTSSCSCCTTCTTCHHHHGGGBCSSSCBCCHHHHCCCHHHHHHHHHHHHHHHHTTSSCSCC
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             8756562546845866879999866998758167448978999999999999999974353108


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein S18
family: Ribosomal protein S18
domain: Ribosomal protein S18
species: Thermus thermophilus [TaxId: 274]