BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780330|ref|YP_003064743.1| 30S ribosomal protein S18
[Candidatus Liberibacter asiaticus str. psy62]
(83 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780330|ref|YP_003064743.1| 30S ribosomal protein S18 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 83
Score = 166 bits (420), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MAEVAPTPLLRRNVSHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHK 60
MAEVAPTPLLRRNVSHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHK
Sbjct: 1 MAEVAPTPLLRRNVSHRRKSCPLSGKGAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSHK 60
Query: 61 KQRELAKAIKRARYLGLIAYVNL 83
KQRELAKAIKRARYLGLIAYVNL
Sbjct: 61 KQRELAKAIKRARYLGLIAYVNL 83
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 24.6 bits (52), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 33 YKDIRLLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARYLGLIAYVN 82
Y++ RLL F I P I+ ++HK + +A+ Y+ + Y N
Sbjct: 94 YQEHRLLMDFSVIENIIFPQIIAGINHKTAYQ--RAMDLLSYMDMSQYAN 141
>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter asiaticus str. psy62]
Length = 346
Score = 23.9 bits (50), Expect = 0.55, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 27 GAPRIDYKDIRLLNRFLSQRGKIVPSRISSVSH--KKQRELAKAIKRARY 74
G R+D K ++ NR S + +P I++++H K+Q+ L ++ ++
Sbjct: 44 GQVRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKH 93
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1828
Score = 21.9 bits (45), Expect = 1.8, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 38 LLNRFLSQRGKIVPSRISSVSHKKQRELAKAIKRARY 74
+L+ LSQR + IS HK+ + I + Y
Sbjct: 1270 ILDNILSQRSMEISDSISGAFHKEGNAVVNVIDQQIY 1306
>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1398
Score = 20.4 bits (41), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 31 IDYKDIRLLNRFLSQRGK 48
+D ++ LNR L+Q+GK
Sbjct: 1275 VDRIEVEELNRSLAQQGK 1292
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,535
Number of Sequences: 1233
Number of extensions: 1761
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 83
length of database: 328,796
effective HSP length: 52
effective length of query: 31
effective length of database: 264,680
effective search space: 8205080
effective search space used: 8205080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 31 (16.5 bits)