254780331
50S ribosomal protein L9
GeneID in NCBI database: | 8209316 | Locus tag: | CLIBASIA_01080 |
Protein GI in NCBI database: | 254780331 | Protein Accession: | YP_003064744.1 |
Gene range: | +(225696, 226235) | Protein Length: | 179aa |
Gene description: | 50S ribosomal protein L9 | ||
COG prediction: | [J] Ribosomal protein L9 | ||
KEGG prediction: | rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 | ||
SEED prediction: | LSU ribosomal protein L9p | ||
Pathway involved in KEGG: | Ribosome [PATH:las03010] | ||
Subsystem involved in SEED: | Ribosome LSU bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 179 | 50S ribosomal protein L9 [Candidatus Liberibacter asiat | |||
315122244 | 169 | 50S ribosomal protein L9 [Candidatus Liberibacter solan | 1 | 5e-62 | |
260466965 | 194 | ribosomal protein L9 [Mesorhizobium opportunistum WSM20 | 1 | 5e-46 | |
319404040 | 192 | 50S ribosomal protein L9 [Bartonella rochalimae ATCC BA | 1 | 1e-45 | |
227821457 | 191 | 50S ribosomal protein L9 [Sinorhizobium fredii NGR234] | 1 | 2e-45 | |
319407052 | 192 | 50S ribosomal protein L9 [Bartonella sp. 1-1C] Length = | 1 | 8e-45 | |
319784440 | 194 | ribosomal protein L9 [Mesorhizobium ciceri biovar biser | 1 | 9e-45 | |
13476508 | 194 | 50S ribosomal protein L9 [Mesorhizobium loti MAFF303099 | 1 | 9e-45 | |
312113719 | 192 | ribosomal protein L9 [Rhodomicrobium vannielii ATCC 171 | 1 | 9e-45 | |
222085433 | 193 | ribosomal protein L9 [Agrobacterium radiobacter K84] Le | 1 | 1e-44 | |
15888431 | 191 | 50S ribosomal protein L9 [Agrobacterium tumefaciens str | 1 | 2e-44 |
>gi|315122244|ref|YP_004062733.1| 50S ribosomal protein L9 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 169 | Back alignment and organism information |
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Score = 240 bits (613), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 117/164 (71%), Positives = 143/164 (87%) Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLE 73 MEVILLQN++NLGPMG+VVKVKNGYARNYLLP KKALR N +N+ FESQRSVL+ +LE Sbjct: 1 MEVILLQNMSNLGPMGKVVKVKNGYARNYLLPSKKALRFNAKNEAFFESQRSVLQEKDLE 60 Query: 74 KKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPI 133 +K K+E ++K LA+ FS+IR+AGDTG+LYGSVSSRDIADLL+E+GF++NRG+INLK PI Sbjct: 61 QKKKFEEMAKVLAEDVFSIIRSAGDTGHLYGSVSSRDIADLLLEKGFNINRGKINLKVPI 120 Query: 134 KSVGIHNIMISLHADVSTTITLNVARSTEEMVKQDILGEHEEEI 177 K +G+HNI I LHADV+ TITLN+ARSTEEMVKQ+ + EEEI Sbjct: 121 KLIGVHNIEILLHADVTATITLNIARSTEEMVKQEKTLKPEEEI 164 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|260466965|ref|ZP_05813147.1| ribosomal protein L9 [Mesorhizobium opportunistum WSM2075] Length = 194 | Back alignment and organism information |
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>gi|319404040|emb|CBI77628.1| 50S ribosomal protein L9 [Bartonella rochalimae ATCC BAA-1498] Length = 192 | Back alignment and organism information |
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>gi|227821457|ref|YP_002825427.1| 50S ribosomal protein L9 [Sinorhizobium fredii NGR234] Length = 191 | Back alignment and organism information |
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>gi|319407052|emb|CBI80689.1| 50S ribosomal protein L9 [Bartonella sp. 1-1C] Length = 192 | Back alignment and organism information |
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>gi|319784440|ref|YP_004143916.1| ribosomal protein L9 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 194 | Back alignment and organism information |
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>gi|13476508|ref|NP_108078.1| 50S ribosomal protein L9 [Mesorhizobium loti MAFF303099] Length = 194 | Back alignment and organism information |
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>gi|312113719|ref|YP_004011315.1| ribosomal protein L9 [Rhodomicrobium vannielii ATCC 17100] Length = 192 | Back alignment and organism information |
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>gi|222085433|ref|YP_002543963.1| ribosomal protein L9 [Agrobacterium radiobacter K84] Length = 193 | Back alignment and organism information |
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>gi|15888431|ref|NP_354112.1| 50S ribosomal protein L9 [Agrobacterium tumefaciens str. C58] Length = 191 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 179 | 50S ribosomal protein L9 [Candidatus Liberibacter asiat | ||
PRK00137 | 147 | PRK00137, rplI, 50S ribosomal protein L9; Reviewed | 7e-45 | |
TIGR00158 | 148 | TIGR00158, L9, ribosomal protein L9 | 2e-25 | |
PRK14538 | 838 | PRK14538, PRK14538, putative bifunctional signaling pro | 8e-17 | |
CHL00160 | 153 | CHL00160, rpl9, ribosomal protein L9; Provisional | 7e-15 | |
COG0359 | 148 | COG0359, RplI, Ribosomal protein L9 [Translation, ribos | 2e-34 | |
pfam03948 | 86 | pfam03948, Ribosomal_L9_C, Ribosomal protein L9, C-term | 1e-18 | |
pfam01281 | 48 | pfam01281, Ribosomal_L9_N, Ribosomal protein L9, N-term | 8e-15 | |
KOG4607 | 222 | KOG4607, KOG4607, KOG4607, Mitochondrial ribosomal prot | 2e-08 |
>gnl|CDD|178893 PRK00137, rplI, 50S ribosomal protein L9; Reviewed | Back alignment and domain information |
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>gnl|CDD|129262 TIGR00158, L9, ribosomal protein L9 | Back alignment and domain information |
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>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S ribosomal protein L9; Provisional | Back alignment and domain information |
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>gnl|CDD|177073 CHL00160, rpl9, ribosomal protein L9; Provisional | Back alignment and domain information |
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>gnl|CDD|30708 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|146531 pfam03948, Ribosomal_L9_C, Ribosomal protein L9, C-terminal domain | Back alignment and domain information |
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>gnl|CDD|144760 pfam01281, Ribosomal_L9_N, Ribosomal protein L9, N-terminal domain | Back alignment and domain information |
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>gnl|CDD|39807 KOG4607, KOG4607, KOG4607, Mitochondrial ribosomal protein L9 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 179 | 50S ribosomal protein L9 [Candidatus Liberibacter asiat | ||
PRK00137 | 147 | rplI 50S ribosomal protein L9; Reviewed | 100.0 | |
CHL00160 | 154 | rpl9 ribosomal protein L9; Provisional | 100.0 | |
COG0359 | 148 | RplI Ribosomal protein L9 [Translation, ribosomal struc | 100.0 | |
TIGR00158 | 151 | L9 ribosomal protein L9; InterPro: IPR000244 Ribosomes | 99.92 | |
KOG4607 | 222 | consensus | 99.87 | |
pfam03948 | 86 | Ribosomal_L9_C Ribosomal protein L9, C-terminal domain. | 99.86 | |
pfam01281 | 48 | Ribosomal_L9_N Ribosomal protein L9, N-terminal domain. | 99.75 |
>PRK00137 rplI 50S ribosomal protein L9; Reviewed | Back alignment and domain information |
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>CHL00160 rpl9 ribosomal protein L9; Provisional | Back alignment and domain information |
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>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>TIGR00158 L9 ribosomal protein L9; InterPro: IPR000244 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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>KOG4607 consensus | Back alignment and domain information |
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>pfam03948 Ribosomal_L9_C Ribosomal protein L9, C-terminal domain | Back alignment and domain information |
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>pfam01281 Ribosomal_L9_N Ribosomal protein L9, N-terminal domain | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 179 | 50S ribosomal protein L9 [Candidatus Liberibacter asiat | ||
1p85_F | 149 | Real Space Refined Coordinates Of The 50s Subunit F | 5e-24 | |
1vsa_G | 148 | Crystal Structure Of A 70s Ribosome-Trna Complex Re | 2e-23 | |
2v47_I | 148 | Structure Of The Ribosome Recycling Factor Bound To | 3e-23 | |
2hgj_K | 148 | Crystal Structure Of The 70s Thermus Thermophilus R | 3e-23 | |
3bbo_J | 197 | Homology Model For The Spinach Chloroplast 50s Subu | 8e-23 | |
3pyo_H | 145 | Crystal Structure Of A Complex Containing Domain 3 | 8e-23 | |
2j01_I | 146 | Structure Of The Thermus Thermophilus 70s Ribosome | 1e-22 | |
1nkw_F | 146 | Crystal Structure Of The Large Ribosomal Subunit Fr | 4e-21 | |
487d_K | 149 | Seven Ribosomal Proteins Fitted To A Cryo-Electron | 6e-20 | |
3iy9_H | 60 | Leishmania Tarentolae Mitochondrial Large Ribosomal | 7e-11 | |
1pnu_F | 52 | Crystal Structure Of A Streptomycin Dependent Ribos | 2e-10 | |
2hba_A | 52 | Crystal Structure Of N-Terminal Domain Of Ribosomal | 3e-08 | |
2hbb_A | 51 | Crystal Structure Of The N-Terminal Domain Of Ribos | 2e-04 | |
1cqu_A | 56 | Solution Structure Of The N-Terminal Domain Of Ribo | 3e-04 | |
2hvf_A | 52 | Crystal Structure Of N-Terminal Domain Of Ribosomal | 0.002 |
gi|33357907|pdb|1P85|F Chain F, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 149 | Back alignment and structure |
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 2/149 (1%) Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLE 73 M+VILL V NLG +G+ V VK GYARN+L+P+ KA+ A K+N FE++R+ LEA E Sbjct: 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60 Query: 74 KKAKYEGISKDLAKKNFSLI-RAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSP 132 A ++ + I AGD G L+GS+ +RDIAD + G +V + ++ L + Sbjct: 61 VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 120 Query: 133 I-KSVGIHNIMISLHADVSTTITLNVARS 160 + ++ G H + +H++V + +NV Sbjct: 121 VLRTTGEHEVSFQVHSEVFAKVIVNVVAE 149 |
gi|149240892|pdb|1VSA|G Chain G, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 148 | Back alignment and structure |
gi|157836527|pdb|2V47|I Chain I, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 2 Of 4). This File Contains The 50s Subunit For Molecule 1. Length = 148 | Back alignment and structure |
gi|119389741|pdb|2HGJ|K Chain K, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 148 | Back alignment and structure |
gi|189096132|pdb|3BBO|J Chain J, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 197 | Back alignment and structure |
>gi|322812579|pdb|3PYO|H Chain H, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 145 | Back alignment and structure |
>gi|116668240|pdb|2J01|I Chain I, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 146 | Back alignment and structure |
gi|28948925|pdb|1NKW|F Chain F, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 146 | Back alignment and structure |
gi|7767187|pdb|487D|K Chain K, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 149 | Back alignment and structure |
>gi|251837157|pdb|3IY9|H Chain H, Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit Model Length = 60 | Back alignment and structure |
>gi|34811559|pdb|1PNU|F Chain F, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 52 | Back alignment and structure |
>gi|149241926|pdb|2HBA|A Chain A, Crystal Structure Of N-Terminal Domain Of Ribosomal Protein L9 (Ntl9) K12m Length = 52 | Back alignment and structure |
>gi|149241930|pdb|2HBB|A Chain A, Crystal Structure Of The N-Terminal Domain Of Ribosomal Protein L9 (Ntl9) Length = 51 | Back alignment and structure |
>gi|253722781|pdb|1CQU|A Chain A, Solution Structure Of The N-Terminal Domain Of Ribosomal Protein L9 Length = 56 | Back alignment and structure |
>gi|149242102|pdb|2HVF|A Chain A, Crystal Structure Of N-Terminal Domain Of Ribosomal Protein L9 (Ntl9), G34da Length = 52 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 179 | 50S ribosomal protein L9 [Candidatus Liberibacter asiat | ||
3bbo_J | 197 | Ribosomal protein L9; large ribosomal subunit, spinach | 4e-32 | |
3ofq_H | 149 | 50S ribosomal protein L9; protein biosynthesis, ribosom | 7e-32 | |
1nkw_F | 146 | 50S ribosomal protein L9; ribosome, large subunit, X- R | 1e-30 | |
3i1n_H | 149 | 50S ribosomal protein L9; ribosome structure, protein-R | 1e-28 | |
1div_A | 149 | Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus ste | 2e-28 | |
2j01_I | 148 | 50S ribosomal protein L9; ribosome, tRNA, paromomycin, | 2e-25 | |
2hba_A | 52 | BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding | 5e-14 |
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1 Length = 197 | Back alignment and structure |
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Score = 132 bits (333), Expect = 4e-32 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 3/161 (1%) Query: 2 YDTQKNKKGKKIMEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKEN-KILF 60 ++ KK KK+ +VIL ++VT+LG G+++ VK G+ RN+LLP KA K L Sbjct: 38 FEVVSQKKAKKLRKVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELK 97 Query: 61 ESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLL-IEEG 119 + K+ + F + R G ++GSV+++D+ D++ + Sbjct: 98 MEDERIEAEKQRVKEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQ 157 Query: 120 FDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARS 160 D+++ ++L I+ G + + LH DV+ + +NV + Sbjct: 158 KDIDKRLVSLP-EIRETGEYIAELKLHPDVTARVKINVFAN 197 |
>3ofq_H 50S ribosomal protein L9; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ... Length = 149 | Back alignment and structure |
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>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I Length = 146 | Back alignment and structure |
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>3i1n_H 50S ribosomal protein L9; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_F 1p86_F 1vs8_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vs6_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H 2qox_H ... Length = 149 | Back alignment and structure |
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>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K Length = 149 | Back alignment and structure |
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>2j01_I 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 3hux_I 3huz_I 3f1f_I 1vsp_G 1vsa_G 2wh4_I 3d5d_I 3d5b_I 3f1h_I 2hgu_K ... Length = 148 | Back alignment and structure |
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>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A Length = 52 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 179 | 50S ribosomal protein L9 [Candidatus Liberibacter asiat | ||
1div_A | 149 | Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus | 100.0 | |
3bbo_J | 197 | Ribosomal protein L9; large ribosomal subunit, spinach | 100.0 | |
1nkw_F | 146 | 50S ribosomal protein L9; ribosome, large subunit, X- R | 100.0 | |
2j01_I | 148 | 50S ribosomal protein L9; ribosome, tRNA, paromomycin, | 100.0 | |
3ofq_H | 149 | 50S ribosomal protein L9; protein biosynthesis, ribosom | 100.0 | |
2hba_A | 52 | BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding | 99.79 |
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K | Back alignment and structure |
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Probab=100.00 E-value=0 Score=320.26 Aligned_cols=148 Identities=30% Similarity=0.537 Sum_probs=144.3 Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 33465201117587783888277632110143787301220146888778999998422346789999887654321000 Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLI 93 (179) Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~ 93 (179) |||||++||++||+.||+|+|+||||||||||+|+|++||++|+++++.+++..+++..+..+.|+.++++|++..++|. T Consensus 1 MkVIL~~dv~~lG~~GdvV~Vk~GyaRNyLiP~g~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~i~i~ 80 (149) T 1div_A 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAEELANAKKLKEQLEKLTVTIP 80 (149) T ss_dssp CEEEECSBSSSBGGGTEEEECCTTHHHHTTTTTTSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE T ss_pred CEEEEECCCCCCCCCCCEEEECCCCHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 97999044114798899999877014566155682455588889999999999999888887778889999730557999 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEECH Q ss_conf 255654310034107899999986-08876866630265643205499999963972999999997251 Q gi|254780331|r 94 RAAGDTGYLYGSVSSRDIADLLIE-EGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARST 161 (179) Q Consensus 94 ~k~~e~gkLfGsVt~~dI~~~L~~-~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~~ 161 (179) +++|++|+||||||+.||+++|.+ .|++|++++|.|++|||++|+|+|+|+||++|+++|+|+|++++ T Consensus 81 ~k~~~~gklfGsVt~~~I~~~l~~~~gi~i~k~~i~l~~~Ik~~G~y~v~i~l~~~v~~~i~v~V~~ek 149 (149) T 1div_A 81 AKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPEVTATLKVHVTEQK 149 (149) T ss_dssp ECBCGGGEEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETTEEEEEEEEEEECC T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEEEECCCEEEEEEEEEEECC T ss_conf 974699975022489999999998519821743422445752546689999953997999999999578 |
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1 | Back alignment and structure |
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>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I | Back alignment and structure |
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>2j01_I 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ... | Back alignment and structure |
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>3ofq_H 50S ribosomal protein L9; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ... | Back alignment and structure |
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>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
179 | 50S ribosomal protein L9 [Candidatus Liberibacter asiat | |||
d2gycf2 | 58 | d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Esche | 1e-15 | |
d2j01i2 | 55 | d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Therm | 1e-14 | |
d2hbaa1 | 52 | d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacil | 3e-14 | |
d2gycf1 | 91 | d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Esch | 5e-14 | |
d1diva1 | 94 | d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Baci | 6e-14 | |
d2j01i1 | 91 | d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Ther | 8e-13 |
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]} Length = 58 | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: MbtH/L9 domain-like superfamily: L9 N-domain-like family: Ribosomal protein L9 N-domain domain: Ribosomal protein L9 N-domain species: Escherichia coli [TaxId: 562] Score = 76.2 bits (188), Expect = 1e-15 Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEA 69 M+VILL V NLG +G+ V VK GYARN+L+P+ KA+ A K+N FE++R+ LEA Sbjct: 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEA 56 |
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]} Length = 55 | Back information, alignment and structure |
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>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 52 | Back information, alignment and structure |
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>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]} Length = 91 | Back information, alignment and structure |
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>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 94 | Back information, alignment and structure |
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>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]} Length = 91 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 179 | 50S ribosomal protein L9 [Candidatus Liberibacter asiat | ||
d1diva1 | 94 | Ribosomal protein L9 C-domain {Bacillus stearothermophi | 99.88 | |
d2gycf1 | 91 | Ribosomal protein L9 C-domain {Escherichia coli [TaxId: | 99.86 | |
d2j01i1 | 91 | Ribosomal protein L9 C-domain {Thermus thermophilus [Ta | 99.83 | |
d2gycf2 | 58 | Ribosomal protein L9 N-domain {Escherichia coli [TaxId: | 99.83 | |
d2j01i2 | 55 | Ribosomal protein L9 N-domain {Thermus thermophilus [Ta | 99.81 | |
d2hbaa1 | 52 | Ribosomal protein L9 N-domain {Bacillus stearothermophi | 99.79 |
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Ribosomal protein L9 C-domain superfamily: Ribosomal protein L9 C-domain family: Ribosomal protein L9 C-domain domain: Ribosomal protein L9 C-domain species: Bacillus stearothermophilus [TaxId: 1422] Probab=99.88 E-value=6e-23 Score=162.42 Aligned_cols=92 Identities=27% Similarity=0.533 Sum_probs=86.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHCCCCCCCCEEEEEEEEEECCC Q ss_conf 422346789999887654321000255654310034107899999986-0887686663026564320549999996397 Q gi|254780331|r 70 ANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIE-EGFDVNRGQINLKSPIKSVGIHNIMISLHAD 148 (179) Q Consensus 70 ~~~~~~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~-~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~ 148 (179) +.++.++.|+.++++|+++.|+|.+++|++|+||||||+.||+++|.+ .|++||+++|.|++|||++|+|.|+|+||++ T Consensus 2 k~~~~~~~A~~la~~L~~~~i~i~~k~ge~GkLfGSVt~~dI~~~l~~~~g~~idk~~I~l~~~IK~~G~y~v~i~Lh~~ 81 (94) T d1diva1 2 QAAEELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPE 81 (94) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECBCGGGEEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETT T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEECCCHHHHHHHHHHCCCCEECHHHHHCCCCHHHCEEEEEEEEECCC T ss_conf 67999999999999862988999999889981674035889999998746955558883056763326758999996598 Q ss_pred EEEEEEEEEEECH Q ss_conf 2999999997251 Q gi|254780331|r 149 VSTTITLNVARST 161 (179) Q Consensus 149 V~a~i~V~V~~~~ 161 (179) |+++++|+|++++ T Consensus 82 V~a~i~v~V~~ee 94 (94) T d1diva1 82 VTATLKVHVTEQK 94 (94) T ss_dssp EEEEEEEEEEECC T ss_pred EEEEEEEEEEECC T ss_conf 2999999999578 |
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 179 | 50S ribosomal protein L9 [Candidatus Liberibacter | ||
3i1n_H_ | 149 | (H:) 50S ribosomal protein L9; ribosome structure, | 4e-32 | |
1nkw_F_ | 146 | (F:) 50S ribosomal protein L9; ribosome, large sub | 2e-31 | |
1div_A_40-149 | 110 | (A:40-149) Ribosomal protein L9; rRNA-binding; 2.6 | 7e-19 | |
2j01_I_41-148 | 106 | (I:41-148) 50S ribosomal protein L9; ribosome, tRN | 2e-17 | |
3bbo_J_122-197 | 76 | (J:122-197) Ribosomal protein L9; large ribosomal | 2e-13 | |
2j01_I_1-40 | 40 | (I:1-40) 50S ribosomal protein L9; ribosome, tRNA, | 1e-12 | |
2hba_A_1-39 | 39 | (A:1-39) BL17, 50S ribosomal protein L9; NTL9, K12 | 1e-12 | |
1div_A_1-39 | 39 | (A:1-39) Ribosomal protein L9; rRNA-binding; 2.60A | 1e-12 |
>3i1n_H (H:) 50S ribosomal protein L9; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_F 1p86_F 1vs8_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vs6_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H 2qox_H ...Length = 149 | Back alignment and structure |
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Score = 131 bits (332), Expect = 4e-32 Identities = 55/146 (37%), Positives = 87/146 (59%), Gaps = 2/146 (1%) Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLE 73 M+VILL V NLG +G+ V VK GYARN+L+P+ KA+ A K+N FE++R+ LEA E Sbjct: 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60 Query: 74 KKAKYEGISKDLAKKNFSLIRA-AGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINL-KS 131 A ++ + I + AGD G L+GS+ +RDIAD + G +V + ++ L Sbjct: 61 VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 120 Query: 132 PIKSVGIHNIMISLHADVSTTITLNV 157 +++ G H + +H++V + +NV Sbjct: 121 VLRTTGEHEVSFQVHSEVFAKVIVNV 146 |
>1nkw_F (F:) 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans}Length = 146 | Back alignment and structure |
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>1div_A (A:40-149) Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus stearothermophilus}Length = 110 | Back alignment and structure |
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>2j01_I (I:41-148) 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}Length = 106 | Back alignment and structure |
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>3bbo_J (J:122-197) Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana}Length = 76 | Back alignment and structure |
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>2j01_I (I:1-40) 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}Length = 40 | Back alignment and structure |
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>2hba_A (A:1-39) BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus}Length = 39 | Back alignment and structure |
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>1div_A (A:1-39) Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus stearothermophilus}Length = 39 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 179 | 50S ribosomal protein L9 [Candidatus Liberibacter asiat | ||
1nkw_F_ | 146 | 50S ribosomal protein L9; ribosome, large subunit, | 100.0 | |
3i1n_H_ | 149 | 50S ribosomal protein L9; ribosome structure, prot | 100.0 | |
1div_A_40-149 | 110 | Ribosomal protein L9; rRNA-binding; 2.60A {Bacillu | 99.93 | |
2j01_I_41-148 | 106 | 50S ribosomal protein L9; ribosome, tRNA, paromomy | 99.88 | |
3bbo_J_122-197 | 76 | Ribosomal protein L9; large ribosomal subunit, spi | 99.67 | |
2j01_I_1-40 | 40 | 50S ribosomal protein L9; ribosome, tRNA, paromomy | 99.63 | |
1div_A_1-39 | 39 | Ribosomal protein L9; rRNA-binding; 2.60A {Bacillu | 99.62 | |
2hba_A_1-39 | 39 | BL17, 50S ribosomal protein L9; NTL9, K12M, RNA bi | 99.61 |
>1nkw_F (F:) 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} | Back alignment and structure |
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Probab=100.00 E-value=9.8e-45 Score=302.16 Aligned_cols=145 Identities=37% Similarity=0.579 Sum_probs=141.1 Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 33465201117587783888277632110143787301220146888778999998422346789999887654321000 Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLI 93 (179) Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~ 93 (179) |+|||++|+ +||++||+|+|++|||||||||+|+|+|||++|+++++..++..+++..+..+.|+.++.+|++..+++. T Consensus 1 M~viL~~~~-~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~ 79 (146) T 1nkw_F 1 MQVILLEPS-RLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVAVELS 79 (146) T ss_pred CEEEEEECC-CCCCCCCEEEECCHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 979997447-7898899899876103354065681566699999999999999999999989999999998530244332 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEEC Q ss_conf 2556543100341078999999860887686663026564320549999996397299999999725 Q gi|254780331|r 94 RAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARS 160 (179) Q Consensus 94 ~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~ 160 (179) ++++ +|+||||||+.||+++|.+.|++|++++|.||+||+++|+|+|+|+||++|+++++|+|+++ T Consensus 80 ~~~~-~g~lfGsVt~~~I~~~l~~~gi~I~k~~I~l~~~Ik~~G~~~V~i~l~~~V~~~i~i~V~a~ 145 (146) T 1nkw_F 80 VRAG-EGKIYGAVTHQDVANSLDQLGFDVDRRKIDMPKTVKEVGEYDIAYRAHPEVTIPMKLVVHAA 145 (146) T ss_pred HCCC-CCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCHHHCCEEEEEEEEECCCEEEEEEEEEEEC T ss_conf 0145-78655767889999999985994477566078702223888999994298799999999978 |
>3i1n_H (H:) 50S ribosomal protein L9; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_F 1p86_F 1vs8_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vs6_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H 2qox_H ... | Back alignment and structure |
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>1div_A (A:40-149) Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus stearothermophilus} | Back alignment and structure |
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>2j01_I (I:41-148) 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} | Back alignment and structure |
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>3bbo_J (J:122-197) Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} | Back alignment and structure |
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>2j01_I (I:1-40) 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} | Back alignment and structure |
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>1div_A (A:1-39) Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus stearothermophilus} | Back alignment and structure |
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>2hba_A (A:1-39) BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} | Back alignment and structure |
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