HHsearch alignment for GI: 254780331 and conserved domain: COG0359

>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=1.4e-45  Score=307.78  Aligned_cols=148  Identities=41%  Similarity=0.681  Sum_probs=144.9

Q ss_pred             EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             33465201117587783888277632110143787301220146888778999998422346789999887654321000
Q gi|254780331|r   14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLI   93 (179)
Q Consensus        14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~   93 (179)
T Consensus         1 MkVILl~dV~~lGk~Gdiv~VkdGYarNfLiPkglAv~At~~n~~~~~~~r~~~e~~~~~~~~~a~~lk~~Le~~~~~i~   80 (148)
T COG0359           1 MKVILLEDVKGLGKKGDIVEVKDGYARNFLIPKGLAVPATKGNLKLLEARRAKLEKKAAEELAEAEALKEKLEGKTVEIA   80 (148)
T ss_pred             CEEEEECCHHHCCCCCCEEEECCHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             93899340132587888899646126464030463000799899999999999999888999999999988507609999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEECH
Q ss_conf             25565431003410789999998608876866630265643205499999963972999999997251
Q gi|254780331|r   94 RAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARST  161 (179)
Q Consensus        94 ~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~~  161 (179)
T Consensus        81 ~kag~~GklfGSVt~~dIa~~l~~~g~~idk~~i~l~~~ik~~G~~~V~vkLh~eV~a~v~v~V~~~~  148 (148)
T COG0359          81 VKAGEDGKLFGSVTSKDIAEALKAAGFKLDKRKIRLPNGIKTLGEHEVEVKLHEEVTATVKVNVVAEN  148 (148)
T ss_pred             EECCCCCCEECCCCHHHHHHHHHHCCCCCCHHEEECCCHHHHCCEEEEEEEECCCEEEEEEEEEEECC
T ss_conf             77188886620423899999999708875031556674265361068899825863999999997279