HHsearch alignment for GI: 254780331 and conserved domain: pfam03948
>pfam03948 Ribosomal_L9_C Ribosomal protein L9, C-terminal domain.
Probab=99.86 E-value=9.4e-22 Score=157.75 Aligned_cols=86 Identities=33% Similarity=0.606 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 67899998876543210002556543100341078999999860887686663026564320549999996397299999
Q gi|254780331|r 75 KAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTIT 154 (179)
Q Consensus 75 ~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~ 154 (179)
T Consensus 1 i~~A~~l~~~l~~~~l~i~~~~~e~g~LfGSVt~~dI~~~l~~~g~~i~k~~I~l~~~IK~iG~~~V~I~Lh~~V~~~i~ 80 (86)
T pfam03948 1 LAEAEALAEKLEGLTVTIKAKAGEDGKLFGSVTTKDIAEALKAQGIEIDKKKIELPEPIKTLGEYEVEVKLHPDVTATIK 80 (86)
T ss_pred CHHHHHHHHHHCCCEEEEEEEECCCCEEECCCCHHHHHHHHHHCCCCCCHHHEECCCCCCCCEEEEEEEEECCCEEEEEE
T ss_conf 97799999986598899999968998456135889999999977994158887659840044889999996599799999
Q ss_pred EEEEEC
Q ss_conf 999725
Q gi|254780331|r 155 LNVARS 160 (179)
Q Consensus 155 V~V~~~ 160 (179)
T Consensus 81 i~V~~e 86 (86)
T pfam03948 81 VEVVAE 86 (86)
T ss_pred EEEEEC
T ss_conf 999859