HHsearch alignment for GI: 254780331 and conserved domain: pfam03948

>pfam03948 Ribosomal_L9_C Ribosomal protein L9, C-terminal domain.
Probab=99.86  E-value=9.4e-22  Score=157.75  Aligned_cols=86  Identities=33%  Similarity=0.606  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEE
Q ss_conf             67899998876543210002556543100341078999999860887686663026564320549999996397299999
Q gi|254780331|r   75 KAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTIT  154 (179)
Q Consensus        75 ~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~  154 (179)
T Consensus         1 i~~A~~l~~~l~~~~l~i~~~~~e~g~LfGSVt~~dI~~~l~~~g~~i~k~~I~l~~~IK~iG~~~V~I~Lh~~V~~~i~   80 (86)
T pfam03948         1 LAEAEALAEKLEGLTVTIKAKAGEDGKLFGSVTTKDIAEALKAQGIEIDKKKIELPEPIKTLGEYEVEVKLHPDVTATIK   80 (86)
T ss_pred             CHHHHHHHHHHCCCEEEEEEEECCCCEEECCCCHHHHHHHHHHCCCCCCHHHEECCCCCCCCEEEEEEEEECCCEEEEEE
T ss_conf             97799999986598899999968998456135889999999977994158887659840044889999996599799999


Q ss_pred             EEEEEC
Q ss_conf             999725
Q gi|254780331|r  155 LNVARS  160 (179)
Q Consensus       155 V~V~~~  160 (179)
T Consensus        81 i~V~~e   86 (86)
T pfam03948        81 VEVVAE   86 (86)
T ss_pred             EEEEEC
T ss_conf             999859