Query gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 179 No_of_seqs 119 out of 1863 Neff 6.4 Searched_HMMs 33803 Date Wed Jun 1 12:14:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780331.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1nkw_F 50S ribosomal protein 100.0 9.8E-45 0 302.2 14.3 145 14-160 1-145 (146) 2 >3i1n_H 50S ribosomal protein 100.0 1E-42 0 289.5 -11.8 147 14-160 1-149 (149) 3 >1div_A Ribosomal protein L9; 99.9 3.6E-25 1.1E-29 178.9 11.6 109 53-161 1-110 (110) 4 >2j01_I 50S ribosomal protein 99.9 1.6E-23 4.7E-28 168.5 4.6 104 54-158 1-105 (106) 5 >3bbo_J Ribosomal protein L9; 99.7 3.7E-18 1.1E-22 134.6 -0.2 72 88-160 4-76 (76) 6 >2j01_I 50S ribosomal protein 99.6 4.6E-17 1.4E-21 127.8 1.5 40 14-53 1-40 (40) 7 >1div_A Ribosomal protein L9; 99.6 8.5E-17 2.5E-21 126.1 1.9 39 14-52 1-39 (39) 8 >2hba_A BL17, 50S ribosomal pr 99.6 9.3E-17 2.7E-21 125.9 1.4 39 14-52 1-39 (39) 9 >3f6k_A Sortilin; protein sort 66.8 4 0.00012 21.0 2.4 30 14-44 15-44 (51) 10 >2zy9_A Mg2+ transporter MGTE; 51.0 4.6 0.00014 20.6 0.5 31 95-125 29-60 (68) 11 >3fhm_A Uncharacterized protei 50.8 7.3 0.00022 19.4 1.5 27 96-122 28-54 (62) 12 >2yzi_A Hypothetical protein P 48.2 14 0.00041 17.6 2.6 44 80-123 15-58 (60) 13 >1yav_A Hypothetical protein B 44.6 13 0.00038 17.8 1.9 28 96-123 33-60 (71) 14 >3fbi_A Mediator of RNA polyme 42.9 20 0.00061 16.5 2.8 59 48-106 20-83 (84) 15 >3kpb_A Uncharacterized protei 42.3 15 0.00046 17.3 2.1 34 89-122 21-54 (59) 16 >1y5h_A Hypothetical protein R 36.1 16 0.00048 17.2 1.4 39 83-121 14-52 (56) 17 >2p9m_A Hypothetical protein M 30.8 28 0.00084 15.7 1.9 22 96-117 40-61 (63) 18 >2p9m_A Hypothetical protein M 30.7 31 0.0009 15.4 2.0 28 96-123 45-72 (75) 19 >3ddj_A CBS domain-containing 30.4 37 0.0011 14.9 3.0 36 82-117 18-53 (64) 20 >2o16_A Acetoin utilization pr 30.4 32 0.00093 15.4 2.1 40 81-120 27-66 (80) 21 >3fv6_A YQZB protein; CBS doma 30.2 37 0.0011 14.9 3.0 39 82-120 18-56 (75) 22 >3fio_A A cystathionine beta-s 29.3 18 0.00054 16.8 0.7 28 95-122 27-54 (70) 23 >2ef7_A Hypothetical protein S 29.3 31 0.00091 15.4 1.9 27 96-122 27-53 (56) 24 >1zvd_A SMAD ubiquitination re 27.6 27 0.00078 15.8 1.3 41 23-63 23-64 (72) 25 >3gby_A Uncharacterized protei 27.3 34 0.00099 15.2 1.8 36 82-117 91-126 (128) 26 >2rc3_A CBS domain; in SITU pr 25.8 31 0.00093 15.4 1.4 27 96-122 28-54 (57) 27 >1kzy_C Tumor suppressor P53-b 25.8 16 0.00046 17.3 -0.2 11 40-50 1-11 (49) 28 >2ahq_A Sigma-54, RNA polymera 24.8 47 0.0014 14.3 2.4 23 105-127 37-59 (76) 29 >3ddj_A CBS domain-containing 24.8 19 0.00056 16.8 0.1 23 96-118 27-49 (51) 30 >1pbj_A Hypothetical protein; 24.3 29 0.00084 15.6 1.0 24 95-118 33-56 (58) 31 >3kxr_A Magnesium transporter, 23.5 45 0.0013 14.4 1.8 23 96-118 42-64 (94) 32 >2nyc_A Nuclear protein SNF4; 23.4 50 0.0015 14.1 3.1 38 82-119 19-56 (74) 33 >2uv4_A 5'-AMP-activated prote 22.9 43 0.0013 14.5 1.6 37 80-116 23-59 (61) 34 >2d4z_A Chloride channel prote 22.8 37 0.0011 14.9 1.3 24 95-118 29-52 (55) 35 >1zfj_A Inosine monophosphate 22.4 52 0.0015 14.0 2.1 23 96-118 31-53 (58) 36 >1nd7_A WW domain-containing p 22.2 33 0.00098 15.2 1.0 23 41-63 43-65 (74) 37 >2yzq_A Putative uncharacteriz 21.0 56 0.0016 13.8 2.2 43 76-118 77-119 (126) 38 >2d4z_A Chloride channel prote 20.7 56 0.0017 13.8 1.9 22 97-118 53-74 (81) 39 >2oux_A Magnesium transporter; 20.6 57 0.0017 13.7 1.9 38 81-118 21-58 (84) 40 >3h1d_A E3 ubiquitin-protein l 20.4 51 0.0015 14.1 1.6 22 42-63 44-65 (73) 41 >3euj_A Chromosome partition p 20.3 57 0.0017 13.7 2.4 23 39-64 9-31 (202) 42 >2j9l_A Chloride channel prote 20.2 52 0.0015 14.0 1.6 24 95-118 29-52 (71) No 1 >>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (F:) Probab=100.00 E-value=9.8e-45 Score=302.16 Aligned_cols=145 Identities=37% Similarity=0.579 Sum_probs=141.1 Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 33465201117587783888277632110143787301220146888778999998422346789999887654321000 Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLI 93 (179) Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~ 93 (179) |+|||++|+ +||++||+|+|++|||||||||+|+|+|||++|+++++..++..+++..+..+.|+.++.+|++..+++. T Consensus 1 M~viL~~~~-~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~ 79 (146) T 1nkw_F 1 MQVILLEPS-RLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVAVELS 79 (146) T ss_pred CEEEEEECC-CCCCCCCEEEECCHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 979997447-7898899899876103354065681566699999999999999999999989999999998530244332 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEEC Q ss_conf 2556543100341078999999860887686663026564320549999996397299999999725 Q gi|254780331|r 94 RAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARS 160 (179) Q Consensus 94 ~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~ 160 (179) ++++ +|+||||||+.||+++|.+.|++|++++|.||+||+++|+|+|+|+||++|+++++|+|+++ T Consensus 80 ~~~~-~g~lfGsVt~~~I~~~l~~~gi~I~k~~I~l~~~Ik~~G~~~V~i~l~~~V~~~i~i~V~a~ 145 (146) T 1nkw_F 80 VRAG-EGKIYGAVTHQDVANSLDQLGFDVDRRKIDMPKTVKEVGEYDIAYRAHPEVTIPMKLVVHAA 145 (146) T ss_pred HCCC-CCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCHHHCCEEEEEEEEECCCEEEEEEEEEEEC T ss_conf 0145-78655767889999999985994477566078702223888999994298799999999978 No 2 >>3i1n_H 50S ribosomal protein L9; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_F 1p86_F 1vs8_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vs6_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H 2qox_H ... (H:) Probab=100.00 E-value=1e-42 Score=289.47 Aligned_cols=147 Identities=37% Similarity=0.635 Sum_probs=139.6 Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH Q ss_conf 334652011175877838882776321101437873012201468887789999984223467899998876543-2100 Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKK-NFSL 92 (179) Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~-~l~i 92 (179) |+|||++||+|||++||+|+|+||||||||||+|+|+|||++|+++++..+...++......++|+.++.+|+.+ .+.| T Consensus 1 mkVIL~~dV~~lGk~GdiV~V~~GyaRN~Lip~~~A~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~l~i 80 (149) T 3i1n_H 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTI 80 (149) T ss_dssp CCCEESSCCTTTCCSSCBCCCCHHHHTTTSSSSSSEECCCSSHHHHTTSTTTTTTTTTTTTTTTSTTSCSSCTTCCCCSS T ss_pred CEEEEECCCCCCCCCCCEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE T ss_conf 97999044103798899999873355564112676233067789999988999988777777789988765400047987 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCC-CCCCCCEEEEEEEEEECCCEEEEEEEEEEEC Q ss_conf 0255654310034107899999986088768666302-6564320549999996397299999999725 Q gi|254780331|r 93 IRAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINL-KSPIKSVGIHNIMISLHADVSTTITLNVARS 160 (179) Q Consensus 93 ~~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l-~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~ 160 (179) .++++++|+||||||+.+|+++|+++|..+.++.+.+ ++||+++|+|.|+|+||++|+++++|+|+++ T Consensus 81 ~~k~~~~g~l~gsVt~~~I~~~l~~~~~~~~~~~i~~~~~~Ik~~G~~~v~v~l~~~v~~~i~v~V~~e 149 (149) T 3i1n_H 81 ASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE 149 (149) T ss_dssp CSCCCGGGSCCCCCCTTCSTTTTCSSSCCCCCCCCCCCSCCCCSSSCCCCCCCSSSSCCCCCCCCCCCC T ss_pred EECCCCCCCCCCCEEHHHHHHHHHHCCCCCCHHHEECCCCCCCCCEEEEEEEEECCCEEEEEEEEEEEC T ss_conf 630278984357240899999998749821688800788541164878999996599099999999979 No 3 >>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus stearothermophilus} (A:40-149) Probab=99.93 E-value=3.6e-25 Score=178.86 Aligned_cols=109 Identities=26% Similarity=0.472 Sum_probs=105.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHCCCC Q ss_conf 20146888778999998422346789999887654321000255654310034107899999986-08876866630265 Q gi|254780331|r 53 NKENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIE-EGFDVNRGQINLKS 131 (179) Q Consensus 53 T~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~-~gi~I~k~~I~l~~ 131 (179) |++|+++++.+++.++++..+.+++|+.+++.|++..|+|.+++|++|+||||||+.||+++|.+ .|++||+++|.+++ T Consensus 1 T~~n~~~~~~~~~~~~~~~~~~~~~a~~la~~L~~~~l~i~~k~g~~gklfGSVt~~~Ia~~l~~~~g~~idk~~I~l~~ 80 (110) T 1div_A 1 TPANLKALEAQKQKEQRQAAEELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELAD 80 (110) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECBCGGGEEEEEECHHHHHHHHHHHHCCCCCGGGBCCCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECHHHHHHHHHHHCCCCCCHHHHHCCC T ss_conf 58899999998899988754234577889887433348999950689870576169999999986318766844540334 Q ss_pred CCCCEEEEEEEEEECCCEEEEEEEEEEECH Q ss_conf 643205499999963972999999997251 Q gi|254780331|r 132 PIKSVGIHNIMISLHADVSTTITLNVARST 161 (179) Q Consensus 132 pIk~~G~y~V~I~L~~~V~a~i~V~V~~~~ 161 (179) |||++|+|.|+|+||++|+|+|+|+|++++ T Consensus 81 ~Ik~~G~~~v~i~Lh~~V~a~i~v~V~~ee 110 (110) T 1div_A 81 AIRALGYTNVPVKLHPEVTATLKVHVTEQK 110 (110) T ss_dssp CEEESEEEEEEEEEETTEEEEEEEEEEECC T ss_pred CCCCCEEEEEEEEECCCEEEEEEEEEEECC T ss_conf 622257789999953986999999999578 No 4 >>2j01_I 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (I:41-148) Probab=99.88 E-value=1.6e-23 Score=168.49 Aligned_cols=104 Identities=25% Similarity=0.398 Sum_probs=100.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHCCCCC Q ss_conf 01468887789999984223467899998876543210002556543100341078999999860-88768666302656 Q gi|254780331|r 54 KENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEE-GFDVNRGQINLKSP 132 (179) Q Consensus 54 ~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~-gi~I~k~~I~l~~p 132 (179) .+|++.++.++..++++.++.+++|+.++..|++..++|.+++| +|+||||||++||+++|.++ |++||+++|.||+| T Consensus 1 k~nl~~~~~~k~~~~~~~~~~~~~a~~~a~~L~~~~i~i~~k~g-eGklFGSVt~~dIa~~l~~~~g~~Idk~~I~l~~~ 79 (106) T 2j01_I 1 ESNLKALEARIRAQAKRLAERKAEAERLKEILENLTLTIPVRAG-ETKIYGSVTAKDIAEALSRQHGVTIDPKRLALEKP 79 (106) T ss_dssp HHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHTTCBCCCCCCBC-SSSBSSCCCHHHHHHHHHTTTCCCCCTTTTCCSSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHCCCEECHHHHHCCCC T ss_conf 77899999988877543245667888888887655454442145-54330455799999999873296765646404564 Q ss_pred CCCEEEEEEEEEECCCEEEEEEEEEE Q ss_conf 43205499999963972999999997 Q gi|254780331|r 133 IKSVGIHNIMISLHADVSTTITLNVA 158 (179) Q Consensus 133 Ik~~G~y~V~I~L~~~V~a~i~V~V~ 158 (179) ||++|.|+|+|+||++|+|+++|+|+ T Consensus 80 IK~~G~~~v~ikLh~~V~a~i~v~Vv 105 (106) T 2j01_I 80 IKELGEYVLTYKPHPEVPIQLKVSVV 105 (106) T ss_dssp CCSCEEEECCCSSSSCCCCEEEECCC T ss_pred HHHEEEEEEEEEECCCEEEEEEEEEE T ss_conf 12029999999964987999999999 No 5 >>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (J:122-197) Probab=99.67 E-value=3.7e-18 Score=134.64 Aligned_cols=72 Identities=25% Similarity=0.497 Sum_probs=68.1 Q ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEEC Q ss_conf 3210002556543100341078999999860-887686663026564320549999996397299999999725 Q gi|254780331|r 88 KNFSLIRAAGDTGYLYGSVSSRDIADLLIEE-GFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARS 160 (179) Q Consensus 88 ~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~-gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~ 160 (179) .+++|.+++|++|+||||||++||+++|.++ |++|||++|.|| |||++|.|.|.++||++|+++++|+|.++ T Consensus 4 ~~i~i~~k~g~~gklFGSVt~~dIa~~l~~~~g~~idkk~I~l~-~IK~lG~y~v~i~Lh~~V~a~i~v~V~~e 76 (76) T 3bbo_J 4 GAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLP-EIRETGEYIAELKLHPDVTARVKINVFAN 76 (76) T ss_dssp CCCBCCCCBCTTSSBSSCCSSHHHHGGGTSSSSCCCCSTTCCSC-CCSSSSCEEECCCCBTTBCCCEEEBCCCC T ss_pred CEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCC-CCCCCEEEEEEEEECCCEEEEEEEEEEEC T ss_conf 12667740454432213558899999986314870366405451-33235768999994499699999999969 No 6 >>2j01_I 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (I:1-40) Probab=99.63 E-value=4.6e-17 Score=127.80 Aligned_cols=40 Identities=60% Similarity=0.942 Sum_probs=39.5 Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCC Q ss_conf 3346520111758778388827763211014378730122 Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRAN 53 (179) Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT 53 (179) |+|||++||++||++||+|+|++|||||||||+|+|++|| T Consensus 1 m~VIL~~dv~~lG~~Gdiv~V~~GyaRN~Lip~~~A~~aT 40 (40) T 2j01_I 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLAT 40 (40) T ss_dssp CEEEECSCCSSSCSTTCEEECCHHHHHHTTTTTTSEEECC T ss_pred CEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCC T ss_conf 9699905410279789899987157888731212320241 No 7 >>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus stearothermophilus} (A:1-39) Probab=99.62 E-value=8.5e-17 Score=126.11 Aligned_cols=39 Identities=41% Similarity=0.721 Sum_probs=38.4 Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECC Q ss_conf 334652011175877838882776321101437873012 Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRA 52 (179) Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~a 52 (179) |||||++||++||++||+|+|++|||||||||+++|++| T Consensus 1 mkVIL~~dv~~lGk~Gdvv~V~~GyaRN~LiP~~lA~~A 39 (39) T 1div_A 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEA 39 (39) T ss_dssp CEEEECSBSSSBGGGTEEEECCTTHHHHTTTTTTSEEEC T ss_pred CEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHH T ss_conf 979990441036988999998736688874066565351 No 8 >>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} (A:1-39) Probab=99.61 E-value=9.3e-17 Score=125.86 Aligned_cols=39 Identities=41% Similarity=0.762 Sum_probs=38.4 Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECC Q ss_conf 334652011175877838882776321101437873012 Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRA 52 (179) Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~a 52 (179) |||||++||++||+.||+|+|++|||||||||+++|++| T Consensus 1 mkVIL~~dv~~lGk~Gdvv~V~~GyaRN~LiP~~~A~~A 39 (39) T 2hba_A 1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEA 39 (39) T ss_dssp CEEEESSCBTTTBCTTCEEECCHHHHHHTTTTTTSEEEC T ss_pred CEEEECCCCCCCCCCCCEEEECCCCHHHHHCCCCCCHHC T ss_conf 979982531057878999998661033451567953137 No 9 >>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys- rich domains, ssortilin, sortilin VPS10P-D, protein-peptide complex; HET: NAG BMA PGE; 2.00A {Homo sapiens} (A:89-139) Probab=66.82 E-value=4 Score=21.02 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=26.0 Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEEC Q ss_conf 3346520111758778388827763211014 Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLL 44 (179) Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~Li 44 (179) =||||+.||++ |..|-.+-.+.-|+.+|-. T Consensus 15 gkViLt~dvs~-gs~g~riFrS~Dfg~tF~~ 44 (51) T 3f6k_A 15 GKVVLTAEVSG-GSRGGRIFRSSDFAKNFVQ 44 (51) T ss_dssp CCEEEEECCCT-TCSSCEEEEESSTTSSCEE T ss_pred CEEEEEECCCC-CCCCCCEEEEEECCCCCEE T ss_conf 88999953346-7788618998009989648 No 10 >>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:227-294) Probab=51.00 E-value=4.6 Score=20.62 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=22.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHH Q ss_conf 556543100341078999999860-8876866 Q gi|254780331|r 95 AAGDTGYLYGSVSSRDIADLLIEE-GFDVNRG 125 (179) Q Consensus 95 k~~e~gkLfGsVt~~dI~~~L~~~-gi~I~k~ 125 (179) =++++|+|.|-||..||...+.+. ...+... T Consensus 29 Vvd~~gklvGiiT~~Di~~~~~~~~~~~~~~~ 60 (68) T 2zy9_A 29 VVDEEGRLVGIVTVDDVLDVLEAEATEDIHKL 60 (68) T ss_dssp EECTTSBEEEEEEHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHC T ss_conf 01236947877559999998987515677640 No 11 >>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, structural genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} (A:37-98) Probab=50.77 E-value=7.3 Score=19.36 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=22.3 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 565431003410789999998608876 Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEEGFDV 122 (179) Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~gi~I 122 (179) ++++|+|.|-||..||...+..++... T Consensus 28 vd~~~~lvGiiT~~Di~~~~~~~~~~~ 54 (62) T 3fhm_A 28 TDADGVVLGIFTERDLVKAVAGQGAAS 54 (62) T ss_dssp ECTTSCEEEEEEHHHHHHHHHHHGGGG T ss_pred EECCCEEEEEEEHHHHHHHHHHHCCCC T ss_conf 958981999877789877565411575 No 12 >>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} (A:14-73) Probab=48.24 E-value=14 Score=17.59 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC Q ss_conf 99887654321000255654310034107899999986088768 Q gi|254780331|r 80 GISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVN 123 (179) Q Consensus 80 ~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~ 123 (179) +.+..+....+.---=++++|+|.|=||..||..++...+..++ T Consensus 15 ea~~~m~~~~i~~lpVvD~~~~lvGiiT~~Di~~~~~~~~~~~~ 58 (60) T 2yzi_A 15 EASRLXXEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYD 58 (60) T ss_dssp HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTT T ss_pred HHHHHHHHCCCCEEEEECCCCCHHEEEHHHHHHHHHHHCCCCCC T ss_conf 99999998699868530454202200008899988873166422 No 13 >>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} (A:89-159) Probab=44.60 E-value=13 Score=17.81 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=23.0 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCC Q ss_conf 5654310034107899999986088768 Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEEGFDVN 123 (179) Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~gi~I~ 123 (179) ++++|+|.|-||..||...+...+-..+ T Consensus 33 Vd~~~~lvGiiT~~Di~~~~~~~~~~~~ 60 (71) T 1yav_A 33 ENDEQVFEGIFTRRVVLKELNKHIRSLN 60 (71) T ss_dssp ECTTCBEEEEEEHHHHHHHHHHHC---- T ss_pred EEECCEEEEEEEHHHHHHHHHHHHHHHH T ss_conf 8039999999889999999999999877 No 14 >>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A (A:) Probab=42.93 E-value=20 Score=16.53 Aligned_cols=59 Identities=7% Similarity=-0.004 Sum_probs=29.8 Q ss_pred CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCCCCC--CCCCCCC Q ss_conf 730122014688877899999842234678999988765---4321000255654--3100341 Q gi|254780331|r 48 KALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLA---KKNFSLIRAAGDT--GYLYGSV 106 (179) Q Consensus 48 ~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~---~~~l~i~~k~~e~--gkLfGsV 106 (179) +=..-|++|++.++..++...............-...++ .+-+-+.=..-.+ -++||+| T Consensus 20 fwK~FT~ENl~kl~e~k~~~~~~~~~~~~~~~~~~r~~~~p~ELrfLvPP~~P~~g~Yr~FG~~ 83 (84) T 3fbi_A 20 YVKFFTQSNLEKLPKYKEKKAASAKQTAPNNSNGGSEEEITCALDYLIPPPXPKNQQYRAFGSI 83 (84) T ss_dssp GGGGCCHHHHHHHHHHHHHHHC---------------CCCCSGGGGGSCCCCCSSGGGSCSCCC T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCC T ss_conf 8885599999999999998775047767566565445689753313779767999963211335 No 15 >>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* (A:11-69) Probab=42.29 E-value=15 Score=17.31 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=25.2 Q ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 2100025565431003410789999998608876 Q gi|254780331|r 89 NFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDV 122 (179) Q Consensus 89 ~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~gi~I 122 (179) .+.---=++++|+|-|=||..||...+.+....+ T Consensus 21 ~~~~~pVvd~~~~lvGiiT~~Di~~~~~~~~~~v 54 (59) T 3kpb_A 21 NINHLPIVDEHGKLVGIITSWDIAKALAQNKKTI 54 (59) T ss_dssp TCSCEEEECTTSBEEEEECHHHHHHHHHTTCCBG T ss_pred CCCEEEEECCCCCEEEEEEHHHHHHHHCCCCCCH T ss_conf 9819999908994999988999986441389799 No 16 >>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} (A:19-74) Probab=36.11 E-value=16 Score=17.18 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=25.3 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 876543210002556543100341078999999860887 Q gi|254780331|r 83 KDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFD 121 (179) Q Consensus 83 ~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~gi~ 121 (179) +.+....+.=-.=++++|+|-|-||..||...+-.++.. T Consensus 14 ~lm~~~~i~~~pVVd~~g~lvGivT~rDi~~~~v~~~~~ 52 (56) T 1y5h_A 14 QYXREHDIGALPICGDDDRLHGXLTDRDIVIKGLAAGLD 52 (56) T ss_dssp HHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC T ss_pred HHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 999984999752131323355441255665554203667 No 17 >>2p9m_A Hypothetical protein MJ0922; structural genomics, southeast collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii DSM2661} (A:76-138) Probab=30.83 E-value=28 Score=15.65 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.3 Q ss_pred CCCCCCCCCCCCHHHHHHHHHH Q ss_conf 5654310034107899999986 Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIE 117 (179) Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~ 117 (179) ++++|+|-|-||..|+..++.+ T Consensus 40 Vd~~g~lvGiiT~~Di~~~~~~ 61 (63) T 2p9m_A 40 VDKNNKLVGIISDGDIIRTISK 61 (63) T ss_dssp ECTTSBEEEEEEHHHHHHHHHH T ss_pred ECCCCEEEEEEEHHHHHHHHHH T ss_conf 9579969999889999999998 No 18 >>2p9m_A Hypothetical protein MJ0922; structural genomics, southeast collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii DSM2661} (A:1-75) Probab=30.69 E-value=31 Score=15.44 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=23.0 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCC Q ss_conf 5654310034107899999986088768 Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEEGFDVN 123 (179) Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~gi~I~ 123 (179) ++++|+|-|=||..||...+.+.+...+ T Consensus 45 vd~~~~lvGiit~~Di~~~~~~~~~~~~ 72 (75) T 2p9m_A 45 IDDENKVIGIVTTTDIGYNLIRDKYTLE 72 (75) T ss_dssp ECTTCBEEEEEEHHHHHHHHTTTCCCSS T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 3554146667777889998861443322 No 19 >>3ddj_A CBS domain-containing protein; NP_344512.1, structural genomics, joint center for structural genomics, JCSG; HET: AMP; 1.80A {Sulfolobus solfataricus} (A:233-296) Probab=30.40 E-value=37 Score=14.90 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 887654321000255654310034107899999986 Q gi|254780331|r 82 SKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIE 117 (179) Q Consensus 82 ~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~ 117 (179) ++.+....+.---=+.++|+|-|-||..||...+.. T Consensus 18 ~~~m~~~~i~~lpVvDe~~~lvGIvT~~Di~~~~~~ 53 (64) T 3ddj_A 18 AAEXIVKRIGSLLILNKDNTIRGIITERDLLIALHH 53 (64) T ss_dssp HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH T ss_pred HHHHHHHCCCEEEEECCCCEEEEEEEHHHHHHHHHH T ss_conf 999998299889999079989999889999999988 No 20 >>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Vibrio cholerae} (A:1-80) Probab=30.38 E-value=32 Score=15.36 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 9887654321000255654310034107899999986088 Q gi|254780331|r 81 ISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGF 120 (179) Q Consensus 81 ~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~gi 120 (179) ..+.+....+.---=++++|++-|=||..||...+..... T Consensus 27 a~~~m~~~~~~~lpVvd~~~~lvGiit~~Di~~~~~~~~~ 66 (80) T 2o16_A 27 AKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQ 66 (80) T ss_dssp HHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 9999998699755301454222333420015565222114 No 21 >>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic gene regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* (A:22-96) Probab=30.21 E-value=37 Score=14.88 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=25.6 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 887654321000255654310034107899999986088 Q gi|254780331|r 82 SKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGF 120 (179) Q Consensus 82 ~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~gi 120 (179) .+.+....+.---=++++|++.|-||..||...+...+. T Consensus 18 ~~~m~~~~i~~~~Vvd~~~~~vGivT~~Di~~~~~~~~~ 56 (75) T 3fv6_A 18 ICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQE 56 (75) T ss_dssp HHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSC T ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHHHHCCCC T ss_conf 999997599489999699819999889999877761665 No 22 >>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A (A:) Probab=29.34 E-value=18 Score=16.83 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=22.5 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 5565431003410789999998608876 Q gi|254780331|r 95 AAGDTGYLYGSVSSRDIADLLIEEGFDV 122 (179) Q Consensus 95 k~~e~gkLfGsVt~~dI~~~L~~~gi~I 122 (179) -+.++|+|.|-||..||..++...+... T Consensus 27 pV~~~~~lvGIiT~~Di~~~~~~~~~~~ 54 (70) T 3fio_A 27 VVXEGDEILGVVTERDILDKVVAKGKNP 54 (70) T ss_dssp EEEETTEEEEEEEHHHHHHHTTTTTCCG T ss_pred EEEECCEEEEEEEHHHHHHHHHHCCCCC T ss_conf 9998999999985999999999669980 No 23 >>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Sulfolobus tokodaii str} (A:78-133) Probab=29.32 E-value=31 Score=15.42 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=22.1 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 565431003410789999998608876 Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEEGFDV 122 (179) Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~gi~I 122 (179) ++++|+|-|=||..||..++....-.. T Consensus 27 VD~~~~lvGiiT~~Di~k~~~~~~~~~ 53 (56) T 2ef7_A 27 VDDKGNLKGIISIRDITRAIDDXFETX 53 (56) T ss_dssp ECTTSCEEEEEEHHHHHHHHHHHC--- T ss_pred EECCCEEEEEEEHHHHHHHHHHHHHHH T ss_conf 938996999999999999998888876 No 24 >>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY tgfbeta; 2.10A {Homo sapiens} (A:153-224) Probab=27.57 E-value=27 Score=15.83 Aligned_cols=41 Identities=24% Similarity=0.127 Sum_probs=25.3 Q ss_pred CCCCCCCCEEEECCCCEEE-EECCCCCEECCCCHHHHHHHHH Q ss_conf 1758778388827763211-0143787301220146888778 Q gi|254780331|r 23 TNLGPMGEVVKVKNGYARN-YLLPKKKALRANKENKILFESQ 63 (179) Q Consensus 23 ~~lG~~Gdiv~Vk~GyaRN-~LiP~~~A~~aT~~n~~~~~~~ 63 (179) .-+|---.+-....|..+. =|+|.|-.++.|.+|..++=.. T Consensus 23 e~l~L~F~~~~~~~g~~~~veLip~G~~i~VT~~N~~eYV~~ 64 (72) T 1zvd_A 23 GVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRL 64 (72) T ss_dssp TTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHH T ss_pred HHHCCEEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHH T ss_conf 221362799860588613464489987663156449999999 No 25 >>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} (A:) Probab=27.25 E-value=34 Score=15.18 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 887654321000255654310034107899999986 Q gi|254780331|r 82 SKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIE 117 (179) Q Consensus 82 ~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~ 117 (179) ...+....+..--=++++|++.|-||..||.+.+.+ T Consensus 91 ~~~m~~~~~~~l~Vvd~~g~~~Givt~~di~~~l~~ 126 (128) T 3gby_A 91 LISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE 126 (128) T ss_dssp HHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT T ss_pred HHHHHHCEEEEEEEECCCCEEEEEEEHHHHHHHHHH T ss_conf 787664122058999479979999999999999982 No 26 >>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} (A:18-74) Probab=25.84 E-value=31 Score=15.38 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=22.3 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 565431003410789999998608876 Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEEGFDV 122 (179) Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~gi~I 122 (179) +-++|+|.|=||..||...+...|... T Consensus 28 Vvd~~~lvGIiT~~Dl~~~~~~~~~~~ 54 (57) T 2rc3_A 28 VMKDEKLVGILTERDFSRKSYLLDKPV 54 (57) T ss_dssp EEETTEEEEEEEHHHHHHHGGGSSSCG T ss_pred EEECCEEEEEEEEEEEEEECCCCCCCC T ss_conf 950999998875310110011112344 No 27 >>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} (C:131-151,C:232-259) Probab=25.77 E-value=16 Score=17.29 Aligned_cols=11 Identities=64% Similarity=1.011 Sum_probs=8.8 Q ss_pred EEEECCCCCEE Q ss_conf 11014378730 Q gi|254780331|r 40 RNYLLPKKKAL 50 (179) Q Consensus 40 RN~LiP~~~A~ 50 (179) ||||+|-|... T Consensus 1 rnyllpagysl 11 (49) T 1kzy_C 1 RNYLLPAGYSL 11 (49) T ss_dssp GGSBCCCEEET T ss_pred HHCCCCCCCCC T ss_conf 88007665341 No 28 >>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A (A:) Probab=24.84 E-value=47 Score=14.28 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.0 Q ss_pred CCCHHHHHHHHHHCCCCCCHHHH Q ss_conf 41078999999860887686663 Q gi|254780331|r 105 SVSSRDIADLLIEEGFDVNRGQI 127 (179) Q Consensus 105 sVt~~dI~~~L~~~gi~I~k~~I 127 (179) +.+-..|++.|.++|+.|.++-| T Consensus 37 PlSD~~I~~~L~~~Gi~IsRRTV 59 (76) T 2ahq_A 37 PYSDQEIANILKEKGFKVARRTV 59 (76) T ss_dssp CCCHHHHHHHHTTTSSCCCHHHH T ss_pred CCCHHHHHHHHHHCCCCEEHHHH T ss_conf 96499999999976997420319 No 29 >>3ddj_A CBS domain-containing protein; NP_344512.1, structural genomics, joint center for structural genomics, JCSG; HET: AMP; 1.80A {Sulfolobus solfataricus} (A:104-154) Probab=24.81 E-value=19 Score=16.75 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=19.5 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 56543100341078999999860 Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEE 118 (179) Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~ 118 (179) ++++|+|-|-||..||...+.+. T Consensus 27 vD~~~~lvGiiT~~Di~~~~~~~ 49 (51) T 3ddj_A 27 VDINDKPVGIVTEREFLLLYKDL 49 (51) T ss_dssp ECTTSCEEEEEEHHHHGGGGGGS T ss_pred EEECCCCCCEEECCCCCCCCCCC T ss_conf 95234565112303444322256 No 30 >>1pbj_A Hypothetical protein; structural genomics, CBS domain, PSI, protein structure initiative; 1.40A {Methanothermobacterthermautotrophicus str} (A:68-125) Probab=24.32 E-value=29 Score=15.63 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.2 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 556543100341078999999860 Q gi|254780331|r 95 AAGDTGYLYGSVSSRDIADLLIEE 118 (179) Q Consensus 95 k~~e~gkLfGsVt~~dI~~~L~~~ 118 (179) .+-++|+|-|=||..||..++.+. T Consensus 33 pVvd~~~lvGiiT~~Di~~~l~~~ 56 (58) T 1pbj_A 33 LVEEDDEIIGVISATDILRAKXAK 56 (58) T ss_dssp EEEETTEEEEEEEHHHHHHHHC-- T ss_pred EEEECCEEEEEEEHHHHHHHHHHC T ss_conf 999899999999999998734653 No 31 >>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural genomics, PSI-2; 2.41A {Shewanella oneidensis mr-1} (A:53-61,A:121-205) Probab=23.51 E-value=45 Score=14.40 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=19.6 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 56543100341078999999860 Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEE 118 (179) Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~ 118 (179) ++++|+|-|-||..||.+.+.+. T Consensus 42 vD~~g~lvGiiT~~Di~~~~~~~ 64 (94) T 3kxr_A 42 IDDAGELIGRVTLRAATALVREH 64 (94) T ss_dssp ECTTSBEEEEEEHHHHHHHHHHH T ss_pred ECCCCEEEEEEEHHHHHHHHHHH T ss_conf 87699899998899999999999 No 32 >>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} (A:16-89) Probab=23.43 E-value=50 Score=14.11 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 88765432100025565431003410789999998608 Q gi|254780331|r 82 SKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEG 119 (179) Q Consensus 82 ~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~g 119 (179) ...+....+.---=++++|+|-|-||..||...+...+ T Consensus 19 ~~~m~~~~~~~~pVvd~~g~lvGiit~~Di~~~~~~~~ 56 (74) T 2nyc_A 19 IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI 56 (74) T ss_dssp HHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC- T ss_pred HHHHHHCCCCEEEEECCCCCCCCEEEHHHHHHHHHHCC T ss_conf 99999879865854357995821552155788886045 No 33 >>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A* (A:92-152) Probab=22.87 E-value=43 Score=14.53 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=23.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 9988765432100025565431003410789999998 Q gi|254780331|r 80 GISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLI 116 (179) Q Consensus 80 ~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~ 116 (179) +..+.+....+.---=++++|+|-|=||..||..++. T Consensus 23 ~~~~~m~~~~~~~lpVvd~~g~lvGiit~~Di~~~~~ 59 (61) T 2uv4_A 23 TIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALV 59 (61) T ss_dssp HHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHC T ss_pred HHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHHHH T ss_conf 9999898759349999948997999988999998886 No 34 >>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION channel regulatory subunit, transport protein; 3.10A {Torpedo marmorata} (A:196-250) Probab=22.79 E-value=37 Score=14.94 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=19.9 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 556543100341078999999860 Q gi|254780331|r 95 AAGDTGYLYGSVSSRDIADLLIEE 118 (179) Q Consensus 95 k~~e~gkLfGsVt~~dI~~~L~~~ 118 (179) -+-++|+|-|=||..|+..++.+. T Consensus 29 pVv~~g~lvGiit~~Di~~~~~~~ 52 (55) T 2d4z_A 29 YVTSMGKLVGVVALAEIQAAIEGS 52 (55) T ss_dssp EEEETTEEEEEEEHHHHHHHHHC- T ss_pred EEEECCEEEEEEEHHHHHHHHHHH T ss_conf 999899999998899999998765 No 35 >>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} (A:160-217) Probab=22.36 E-value=52 Score=13.98 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.1 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 56543100341078999999860 Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEE 118 (179) Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~ 118 (179) ++++|+|-|=||..||...+... T Consensus 31 vd~~~~lvGiiT~~Di~~~~~~~ 53 (58) T 1zfj_A 31 VDNSGRLSGLITIKDIEKVIEFP 53 (58) T ss_dssp ECTTSBEEEEEEHHHHHHHHHCT T ss_pred ECCCCCEEEEEEECCHHHHHHCC T ss_conf 36789688899951314422075 No 36 >>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} (A:152-225) Probab=22.23 E-value=33 Score=15.21 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=19.0 Q ss_pred EEECCCCCEECCCCHHHHHHHHH Q ss_conf 10143787301220146888778 Q gi|254780331|r 41 NYLLPKKKALRANKENKILFESQ 63 (179) Q Consensus 41 N~LiP~~~A~~aT~~n~~~~~~~ 63 (179) ==|+|.|-.+..|.+|..++-.. T Consensus 43 ~eLip~G~~i~Vt~~N~~eYV~~ 65 (74) T 1nd7_A 43 HDLKLGGSNILVTEENKDEYIGL 65 (74) T ss_dssp EESSTTGGGCBCCTTTHHHHHHH T ss_pred EECCCCCCCCEEHHHHHHHHHHH T ss_conf 64679998643068649999999 No 37 >>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} (A:1-126) Probab=20.97 E-value=56 Score=13.80 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 7899998876543210002556543100341078999999860 Q gi|254780331|r 76 AKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEE 118 (179) Q Consensus 76 ~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~ 118 (179) .........+....+..--=++++|++-|-||..||.+.+... T Consensus 77 ~~l~~~~~~~~~~~~~~l~Vvd~~g~~~GiIt~~dil~~~~~~ 119 (126) T 2yzq_A 77 DTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK 119 (126) T ss_dssp SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT T ss_pred CEEEHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC T ss_conf 1000010333222345431001134543158740323422222 No 38 >>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION channel regulatory subunit, transport protein; 3.10A {Torpedo marmorata} (A:1-81) Probab=20.72 E-value=56 Score=13.77 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=18.8 Q ss_pred CCCCCCCCCCCHHHHHHHHHHC Q ss_conf 6543100341078999999860 Q gi|254780331|r 97 GDTGYLYGSVSSRDIADLLIEE 118 (179) Q Consensus 97 ~e~gkLfGsVt~~dI~~~L~~~ 118 (179) .++|+|-|-||..||..++... T Consensus 53 ~e~~~lvGiit~~di~~~~~~~ 74 (81) T 2d4z_A 53 PDTNTLLGSIDRTEVEGLLQRR 74 (81) T ss_dssp TTTCBEEEEEEHHHHHHHHHHH T ss_pred CCCCEEEEEEEECCCCCHHHHH T ss_conf 8873578998520121101221 No 39 >>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, protein structure initiative, nysgxrc; 2.16A {Enterococcus faecalis V583} (A:203-286) Probab=20.60 E-value=57 Score=13.75 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 98876543210002556543100341078999999860 Q gi|254780331|r 81 ISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEE 118 (179) Q Consensus 81 ~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~ 118 (179) ..+.+....+.---=++++|+|-|=||..||...+.+. T Consensus 21 a~~~m~~~~~~~lpVvd~~~~lvGiit~~Di~~~~~~~ 58 (84) T 2oux_A 21 VAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE 58 (84) T ss_dssp HHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH T ss_pred HHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHHH T ss_conf 99999974986663886799699998899999999999 No 40 >>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A (A:176-248) Probab=20.41 E-value=51 Score=14.06 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=17.7 Q ss_pred EECCCCCEECCCCHHHHHHHHH Q ss_conf 0143787301220146888778 Q gi|254780331|r 42 YLLPKKKALRANKENKILFESQ 63 (179) Q Consensus 42 ~LiP~~~A~~aT~~n~~~~~~~ 63 (179) =|+|.|--++.|.+|..++-.. T Consensus 44 eL~p~G~~i~VT~~N~~eYv~l 65 (73) T 3h1d_A 44 DLKPNGANILVTEENKKEYVHL 65 (73) T ss_dssp GGSSCSSEEECCTTTHHHHHHH T ss_pred ECCCCCCCCCCCHHHHHHHHHH T ss_conf 4588998773537889999999 No 41 >>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* (A:209-410) Probab=20.34 E-value=57 Score=13.72 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=14.4 Q ss_pred EEEEECCCCCEECCCCHHHHHHHHHH Q ss_conf 21101437873012201468887789 Q gi|254780331|r 39 ARNYLLPKKKALRANKENKILFESQR 64 (179) Q Consensus 39 aRN~LiP~~~A~~aT~~n~~~~~~~~ 64 (179) -|.||+|.+-.+. +.+.++|.+. T Consensus 9 ~~~~~~~~~~~vr---dAiedMEarL 31 (202) T 3euj_A 9 LRDYLLPENSGVR---QAFQDMEAAL 31 (202) T ss_dssp GGGSSCCCCTTTT---HHHHC----- T ss_pred HHHHHHHHHHHHH---HHHHHHHHHH T ss_conf 9999787566689---9999999999 No 42 >>2j9l_A Chloride channel protein 5; domain, membrane, transport, CBS domain, CLC, disease mutation, ION channel, ION transport, transmembrane; HET: ATP; 2.30A {Homo sapiens} (A:115-185) Probab=20.15 E-value=52 Score=13.98 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=20.4 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 556543100341078999999860 Q gi|254780331|r 95 AAGDTGYLYGSVSSRDIADLLIEE 118 (179) Q Consensus 95 k~~e~gkLfGsVt~~dI~~~L~~~ 118 (179) .+-++|+|-|=||..||..++.+. T Consensus 29 pVvd~g~lvGiIT~~Di~~~~~~~ 52 (71) T 2j9l_A 29 LVTHNGRLLGIITKKDVLKHIAQM 52 (71) T ss_dssp EEEETTEEEEEEEHHHHHHHHHHH T ss_pred EEEECCEEEEEEEHHHHHHHHHHH T ss_conf 799899899999899999999987 Done!