HHsearch results for GI: 254780331 and protein with PDBid: 2j01_I
>2j01_I 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=100.00 E-value=2.8e-45 Score=305.43 Aligned_cols=147 Identities=34% Similarity=0.537 Sum_probs=141.7
Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 33465201117587783888277632110143787301220146888778999998422346789999887654321000
Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLI 93 (179)
Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~ 93 (179)
|||||++||++||+.||+|+|+||||||||||+|+|+|||++|+++++.+++..+.+..+..+.+..++..+++..+.+.
T Consensus 1 MkVIL~~dv~~lG~~Gdvv~Vk~GyarN~LiP~~~A~~at~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (148)
T 2j01_I 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAERKAEAERLKEILENLTLTIP 80 (148)
T ss_dssp CEEEECSCCSSSCSTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHHHTTCBCCCC
T ss_pred CEEEEECCCCCCCCCCCEEEECCCCHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 97999144103798899999877222355165571555799999999999999876656678999999987532204778
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEECH
Q ss_conf 2556543100341078999999860-8876866630265643205499999963972999999997251
Q gi|254780331|r 94 RAAGDTGYLYGSVSSRDIADLLIEE-GFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVARST 161 (179)
Q Consensus 94 ~k~~e~gkLfGsVt~~dI~~~L~~~-gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~~~~ 161 (179)
++++ +|+||||||+.+|+++|.++ |++|++++|.|++||+++|+|+|+|+||++|+++|+|+|++++
T Consensus 81 ~k~~-~g~LfGsVt~~~I~~~l~~~~~i~I~~~~I~l~~pIk~~G~y~V~v~l~~~v~~~i~v~Vv~~e 148 (148)
T 2j01_I 81 VRAG-ETKIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEVPIQLKVSVVAQE 148 (148)
T ss_dssp CCBC-SSSBSSCCCHHHHHHHHHTTTCCCCCTTTTCCSSCCCSCEEEECCCSSSSCCCCEEEECCC---
T ss_pred EECC-CCCCCCCCCHHHHHHHHHHHCCCEECHHHEECCCCHHCCEEEEEEEEECCCEEEEEEEEEEECC
T ss_conf 6046-6423156489999999998549765499951788210138889999954988999999999688