HHsearch results for GI: 254780331 and protein with PDBid: 3bbo_J
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1
Probab=100.00 E-value=0 Score=322.50 Aligned_cols=159 Identities=27% Similarity=0.450 Sum_probs=152.3
Q ss_pred CCEEECCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 93132121024303346520111758778388827763211014378730122014688877899999842234678999
Q gi|254780331|r 1 MYDTQKNKKGKKIMEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLEKKAKYEG 80 (179)
Q Consensus 1 ~~~~~~~kk~~~~mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~~~~~~~~a~~ 80 (179)
.|.++++||.+++|||||++||++||++||+|+|++|||||||||+|+|++||++|+++++.+++.+++...+..++++.
T Consensus 37 ~~~~~a~kk~kk~~kVIL~~dV~~lGk~GdvV~Vk~GyaRNfLiP~g~A~~aT~~nl~~~~~~~~~~~~~~~~~~~~a~~ 116 (197)
T 3bbo_J 37 NFEVVSQKKAKKLRKVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQ 116 (197)
T ss_dssp -------------CCCCCCSCSSSSCSSCCCSCCCSSSCCCCCTTTTCCCCCCHHHHHHHHTTTHHHHGGGTTTTHHHHT
T ss_pred EEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17999861457405899905412489999999987733440143677265624999999999999999888887767999
Q ss_pred HHHHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHCCCCCCCCEEEEEEEEEECCCEEEEEEEEEE
Q ss_conf 98876543-210002556543100341078999999860-8876866630265643205499999963972999999997
Q gi|254780331|r 81 ISKDLAKK-NFSLIRAAGDTGYLYGSVSSRDIADLLIEE-GFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVA 158 (179)
Q Consensus 81 ~~~~L~~~-~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~-gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~V~a~i~V~V~ 158 (179)
++.+|+++ .+.+.++++++|+||||||+.||+++|.++ |++|++++|.|+ ||+++|+|+|+|+||+||+++|+|+|+
T Consensus 117 l~~~l~~~~~~~i~~~~~~~g~LfGSVT~~dI~~~L~~q~g~~V~k~~I~l~-~IK~lG~y~V~V~Lh~eV~a~ikV~Vv 195 (197)
T 3bbo_J 117 LAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLP-EIRETGEYIAELKLHPDVTARVKINVF 195 (197)
T ss_dssp HHHHSSSCCCCBCCCCBCTTSSBSSCCSSHHHHGGGTSSSSCCCCSTTCCSC-CCSSSSCEEECCCCBTTBCCCEEEBCC
T ss_pred HHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHEECCC-CCCCCEEEEEEEEECCCEEEEEEEEEE
T ss_conf 9998730002443431254544555769999999998733982265026363-453458689999944996999999999
Q ss_pred EC
Q ss_conf 25
Q gi|254780331|r 159 RS 160 (179)
Q Consensus 159 ~~ 160 (179)
++
T Consensus 196 A~ 197 (197)
T 3bbo_J 196 AN 197 (197)
T ss_dssp CC
T ss_pred EC
T ss_conf 69