HHSEARCH alignment of GI: 254780331 and SCOP domain: d1diva1

Alignment
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.88  E-value=6e-23  Score=162.42  Aligned_cols=92  Identities=27%  Similarity=0.533  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHCCCCCCCCEEEEEEEEEECCC
Q ss_conf             422346789999887654321000255654310034107899999986-0887686663026564320549999996397
Q gi|254780331|r   70 ANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIE-EGFDVNRGQINLKSPIKSVGIHNIMISLHAD  148 (179)
Q Consensus        70 ~~~~~~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~-~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~  148 (179)
                      +.++.++.|+.++++|+++.|+|.+++|++|+||||||+.||+++|.+ .|++||+++|.|++|||++|+|.|+|+||++
T Consensus         2 k~~~~~~~A~~la~~L~~~~i~i~~k~ge~GkLfGSVt~~dI~~~l~~~~g~~idk~~I~l~~~IK~~G~y~v~i~Lh~~   81 (94)
T d1diva1           2 QAAEELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPE   81 (94)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEECBCGGGEEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEECCCHHHHHHHHHHCCCCEECHHHHHCCCCHHHCEEEEEEEEECCC
T ss_conf             67999999999999862988999999889981674035889999998746955558883056763326758999996598


Q ss_pred             EEEEEEEEEEECH
Q ss_conf             2999999997251
Q gi|254780331|r  149 VSTTITLNVARST  161 (179)
Q Consensus       149 V~a~i~V~V~~~~  161 (179)
                      |+++++|+|++++
T Consensus        82 V~a~i~v~V~~ee   94 (94)
T d1diva1          82 VTATLKVHVTEQK   94 (94)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             EEEEEEEEEEECC
T ss_conf             2999999999578


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L9 C-domain
superfamily: Ribosomal protein L9 C-domain
family: Ribosomal protein L9 C-domain
domain: Ribosomal protein L9 C-domain
species: Bacillus stearothermophilus [TaxId: 1422]