Query gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 179
No_of_seqs 119 out of 1863
Neff 6.4
Searched_HMMs 13730
Date Wed Jun 1 03:14:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780331.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1diva1 d.99.1.1 (A:56-149) Ri 99.9 6E-23 4.3E-27 162.4 9.6 92 70-161 2-94 (94)
2 d2gycf1 d.99.1.1 (F:59-149) Ri 99.9 2.3E-22 1.7E-26 158.7 6.6 89 72-160 1-91 (91)
3 d2j01i1 d.99.1.1 (I:56-146) Ri 99.8 3.5E-22 2.6E-26 157.6 2.7 90 69-159 1-91 (91)
4 d2gycf2 d.100.1.1 (F:1-58) Rib 99.8 1E-21 7.3E-26 154.7 5.0 57 14-70 1-57 (58)
5 d2j01i2 d.100.1.1 (I:1-55) Rib 99.8 3E-21 2.2E-25 151.7 3.5 53 14-66 1-53 (55)
6 d2hbaa1 d.100.1.1 (A:1-52) Rib 99.8 1.1E-20 7.7E-25 148.2 2.7 51 14-64 1-51 (52)
7 d1vr9a3 d.37.1.1 (A:1-121) Hyp 44.9 8.1 0.00059 16.6 3.0 42 77-118 78-119 (121)
8 d2ouxa2 d.37.1.1 (A:136-262) M 40.7 10 0.00075 15.9 3.2 42 77-118 83-124 (127)
9 d2v8qe1 d.37.1.1 (E:182-326) 5 32.1 14 0.001 15.1 3.1 23 96-118 121-143 (145)
10 d1jjcb1 a.6.1.1 (B:1-38,B:152- 27.9 17 0.0012 14.6 2.6 36 105-148 15-50 (77)
11 d1m2da_ c.47.1.11 (A:) Thiored 24.3 18 0.0013 14.4 2.0 29 96-124 65-96 (101)
12 d2yvxa2 d.37.1.1 (A:132-275) M 24.1 20 0.0014 14.2 2.9 39 79-117 85-123 (144)
13 d1yava3 d.37.1.1 (A:13-144) Hy 24.0 18 0.0013 14.5 1.8 20 97-116 42-61 (132)
14 d2o16a3 d.37.1.1 (A:20-158) Hy 22.8 21 0.0015 14.0 2.4 43 96-138 39-82 (139)
15 d2nyca1 d.37.1.1 (A:181-320) N 21.8 22 0.0016 13.9 3.0 22 97-118 47-68 (140)
16 d2ef7a1 d.37.1.1 (A:1-127) Unc 21.1 22 0.0016 13.8 3.2 21 98-118 42-62 (127)
17 d1jnsa_ d.26.1.1 (A:) Parvulin 20.7 19 0.0014 14.3 1.4 43 98-143 45-88 (92)
18 d2yzia1 d.37.1.1 (A:4-135) Unc 20.1 24 0.0017 13.7 2.5 19 97-115 43-61 (132)
No 1
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.88 E-value=6e-23 Score=162.42 Aligned_cols=92 Identities=27% Similarity=0.533 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHCCCCCCCCEEEEEEEEEECCC
Q ss_conf 422346789999887654321000255654310034107899999986-0887686663026564320549999996397
Q gi|254780331|r 70 ANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIE-EGFDVNRGQINLKSPIKSVGIHNIMISLHAD 148 (179)
Q Consensus 70 ~~~~~~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~-~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~ 148 (179)
+.++.++.|+.++++|+++.|+|.+++|++|+||||||+.||+++|.+ .|++||+++|.|++|||++|+|.|+|+||++
T Consensus 2 k~~~~~~~A~~la~~L~~~~i~i~~k~ge~GkLfGSVt~~dI~~~l~~~~g~~idk~~I~l~~~IK~~G~y~v~i~Lh~~ 81 (94)
T d1diva1 2 QAAEELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPE 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECBCGGGEEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEECCCHHHHHHHHHHCCCCEECHHHHHCCCCHHHCEEEEEEEEECCC
T ss_conf 67999999999999862988999999889981674035889999998746955558883056763326758999996598
Q ss_pred EEEEEEEEEEECH
Q ss_conf 2999999997251
Q gi|254780331|r 149 VSTTITLNVARST 161 (179)
Q Consensus 149 V~a~i~V~V~~~~ 161 (179)
|+++++|+|++++
T Consensus 82 V~a~i~v~V~~ee 94 (94)
T d1diva1 82 VTATLKVHVTEQK 94 (94)
T ss_dssp EEEEEEEEEEECC
T ss_pred EEEEEEEEEEECC
T ss_conf 2999999999578
No 2
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]}
Probab=99.86 E-value=2.3e-22 Score=158.73 Aligned_cols=89 Identities=26% Similarity=0.500 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCC-CCCCEEEEEEEEEECCCE
Q ss_conf 23467899998876543-2100025565431003410789999998608876866630265-643205499999963972
Q gi|254780331|r 72 LEKKAKYEGISKDLAKK-NFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKS-PIKSVGIHNIMISLHADV 149 (179)
Q Consensus 72 ~~~~~~a~~~~~~L~~~-~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~-pIk~~G~y~V~I~L~~~V 149 (179)
++.++.|+.++++|+++ .++|.+++|++|+||||||++||+++|.++|++|++++|.||+ |||++|.|+|+|+||++|
T Consensus 1 Ae~l~~A~~~a~kl~~~~~i~i~~kage~GkLfGSVt~~dI~~~l~~~g~~Idk~~I~l~~~~IK~lG~y~v~i~Lh~~V 80 (91)
T d2gycf1 1 AEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEV 80 (91)
T ss_dssp CHHHHHHHHHHHHHTTTCCCEEEECEEETTEESSCCCHHHHHHHHTTTTCCCCSTTSCCSSCCCCBSSEEEEEECSSSSC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCHHHHHHHHHHCCCCCCHHHEECCCCCCCCCEEEEEEEEECCCE
T ss_conf 94799999999985399579999995899814600278999999998699636887897886400338999999975997
Q ss_pred EEEEEEEEEEC
Q ss_conf 99999999725
Q gi|254780331|r 150 STTITLNVARS 160 (179)
Q Consensus 150 ~a~i~V~V~~~ 160 (179)
+++++|+|+++
T Consensus 81 ~~~i~v~Vv~e 91 (91)
T d2gycf1 81 FAKVIVNVVAE 91 (91)
T ss_dssp CEEEEEEEEEC
T ss_pred EEEEEEEEEEC
T ss_conf 99999999979
No 3
>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]}
Probab=99.83 E-value=3.5e-22 Score=157.56 Aligned_cols=90 Identities=27% Similarity=0.448 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHCCCCCCCCEEEEEEEEEECC
Q ss_conf 8422346789999887654321000255654310034107899999986-088768666302656432054999999639
Q gi|254780331|r 69 AANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIE-EGFDVNRGQINLKSPIKSVGIHNIMISLHA 147 (179)
Q Consensus 69 ~~~~~~~~~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~-~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~ 147 (179)
++.++.+++|+.++++|++.+|+|.+++|+ |+||||||+.||+++|.+ .|++||+++|.|++|||++|.|.|+|+||+
T Consensus 1 kk~ae~~~~A~~l~~~L~~~~i~i~~k~~e-gkLfGSVt~~dIa~~l~~~~g~~Idk~~I~l~~~IK~~G~~~v~i~L~~ 79 (91)
T d2j01i1 1 KRLAERKAEAERLKEILENLTLTIPVRAGE-TKIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHP 79 (91)
T ss_dssp HHSSSTTTTTHHHHHHHTTCBCCCCCCBCS-SSBSSCCCHHHHHHHHHTTTCCCCCTTTTCCSSCCCSCEEEECCCSSSS
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEEEECC-CCEECCCCHHHHHHHHHHCCCCEECHHHHHCCCCCCCEEEEEEEEEECC
T ss_conf 926899999999999861978999999369-9264335889999999752296003677213566413099999999569
Q ss_pred CEEEEEEEEEEE
Q ss_conf 729999999972
Q gi|254780331|r 148 DVSTTITLNVAR 159 (179)
Q Consensus 148 ~V~a~i~V~V~~ 159 (179)
+|+++++|+|++
T Consensus 80 ~V~a~i~v~VvA 91 (91)
T d2j01i1 80 EVPIQLKVSVVA 91 (91)
T ss_dssp CCCCEEEECCC-
T ss_pred CEEEEEEEEEEC
T ss_conf 979999999989
No 4
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}
Probab=99.83 E-value=1e-21 Score=154.69 Aligned_cols=57 Identities=54% Similarity=0.869 Sum_probs=53.8
Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 334652011175877838882776321101437873012201468887789999984
Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAA 70 (179)
Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~~~~~ 70 (179)
|+|||++||++||+.||+|+|+||||||||||+|+|++||++|+++++.+++.++++
T Consensus 1 MkVIL~~dv~~lG~~Gdvv~Vk~GyaRNyLiP~glA~~at~~n~~~~~~~~~~~e~k 57 (58)
T d2gycf2 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAK 57 (58)
T ss_dssp CEEEECSSSSSCCCSCEEEECCTTTTTTTTTTTTSEEECCCHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCCCEEEECCCHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHC
T ss_conf 969972430037988989998660148771557943027999999999999999835
No 5
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=99.81 E-value=3e-21 Score=151.67 Aligned_cols=53 Identities=49% Similarity=0.746 Sum_probs=50.0
Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHHHH
Q ss_conf 33465201117587783888277632110143787301220146888778999
Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSV 66 (179)
Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~~~ 66 (179)
|+|||++||++||++||||+|++|||||||||+|+|++||++|+++++.+++.
T Consensus 1 MkVILl~dV~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~at~~nl~~~~~~~~~ 53 (55)
T d2j01i2 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRA 53 (55)
T ss_dssp CEEEECSCCSSSCSTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCCCEEEECHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHH
T ss_conf 97998443002798899999873668888265682665699999999999982
No 6
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.79 E-value=1.1e-20 Score=148.24 Aligned_cols=51 Identities=37% Similarity=0.651 Sum_probs=49.3
Q ss_pred EEEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHH
Q ss_conf 334652011175877838882776321101437873012201468887789
Q gi|254780331|r 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQR 64 (179)
Q Consensus 14 mkVIL~~dv~~lG~~Gdiv~Vk~GyaRN~LiP~~~A~~aT~~n~~~~~~~~ 64 (179)
|+|||++||++||+.||+|+|++|||||||||+|+|++||++|+++++.++
T Consensus 1 MkVIL~~dv~~lG~~GdiV~Vk~GyarN~LiP~g~A~~at~~n~~~~~~~k 51 (52)
T d2hbaa1 1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQK 51 (52)
T ss_dssp CEEEESSCBTTTBCTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCCCEEEECCCCHHHHHCCCCCHHHCCHHHHHHHHHHH
T ss_conf 979990432056888999998551056760667862547999999999851
No 7
>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}
Probab=44.88 E-value=8.1 Score=16.60 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 899998876543210002556543100341078999999860
Q gi|254780331|r 77 KYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEE 118 (179)
Q Consensus 77 ~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~ 118 (179)
......+.+....+..-.=++++|++.|=||..||.+++.++
T Consensus 78 ~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~ 119 (121)
T d1vr9a3 78 NITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA 119 (121)
T ss_dssp BHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHHHHHH
T ss_conf 799999999865800614587799699999999999999986
No 8
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=40.69 E-value=10 Score=15.94 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 899998876543210002556543100341078999999860
Q gi|254780331|r 77 KYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEE 118 (179)
Q Consensus 77 ~a~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~~ 118 (179)
.....++.+....+.---=++++|+|-|-||..||.+.+.+.
T Consensus 83 ~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee 124 (127)
T d2ouxa2 83 DQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE 124 (127)
T ss_dssp BHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCEEEEEEECCCEEEEEEEHHHHHHHHHHH
T ss_conf 799999999982988999993799899999989999999997
No 9
>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.07 E-value=14 Score=15.07 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 56543100341078999999860
Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEE 118 (179)
Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~ 118 (179)
++++|++.|-||..||..+|-..
T Consensus 121 vd~~g~l~GiVt~~dii~~lv~~ 143 (145)
T d2v8qe1 121 VDEHDVVKGIVSLSDILQALVLT 143 (145)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHSS
T ss_pred ECCCCEEEEEEEHHHHHHHHHHC
T ss_conf 92699799998899999999861
No 10
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=27.91 E-value=17 Score=14.63 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEEEEEEECCC
Q ss_conf 41078999999860887686663026564320549999996397
Q gi|254780331|r 105 SVSSRDIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHAD 148 (179)
Q Consensus 105 sVt~~dI~~~L~~~gi~I~k~~I~l~~pIk~~G~y~V~I~L~~~ 148 (179)
..++.++++.|...|++++. +..++++-+.+.++|+
T Consensus 15 ~~s~~eLae~LT~~G~EVE~--------i~~~~d~iidieitPN 50 (77)
T d1jjcb1 15 LESPEVLEERLAGLGFETDR--------IERVEEVVLDLEVTPN 50 (77)
T ss_dssp CCCHHHHHHHHHHHTCCEEE--------EEECCCEEEEECCCTT
T ss_pred CCCHHHHHHHHHHCCCCCCC--------CCCCCCCEEEEEECCC
T ss_conf 99999999998614540100--------2232230124552388
No 11
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=24.34 E-value=18 Score=14.39 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHC---CCCCCH
Q ss_conf 56543100341078999999860---887686
Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEE---GFDVNR 124 (179)
Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~---gi~I~k 124 (179)
+-++|..|+-||+.+|.+.+.++ |-.|++
T Consensus 65 i~P~~~~Y~~v~~e~v~~Iv~~hl~~g~~ve~ 96 (101)
T d1m2da_ 65 VYPDGVWYGQVKPEDVDEIVEKHLKGGEPVER 96 (101)
T ss_dssp EETTTEEECSCCGGGHHHHHHHTTTTSCCCGG
T ss_pred ECCCCCEEECCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 81783278169999999999999988938268
No 12
>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=24.08 E-value=20 Score=14.19 Aligned_cols=39 Identities=26% Similarity=0.489 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999887654321000255654310034107899999986
Q gi|254780331|r 79 EGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIE 117 (179)
Q Consensus 79 ~~~~~~L~~~~l~i~~k~~e~gkLfGsVt~~dI~~~L~~ 117 (179)
...+..+....+..--=+.++|+|-|-||..||.+.+.+
T Consensus 85 ~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~ 123 (144)
T d2yvxa2 85 EEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA 123 (144)
T ss_dssp HHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEECCEEEEEEEHHHHHHHHHH
T ss_conf 999999998297779898189999999899999999999
No 13
>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}
Probab=23.96 E-value=18 Score=14.50 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCHHHHHHHHH
Q ss_conf 65431003410789999998
Q gi|254780331|r 97 GDTGYLYGSVSSRDIADLLI 116 (179)
Q Consensus 97 ~e~gkLfGsVt~~dI~~~L~ 116 (179)
+++|++-|-+|..||...+.
T Consensus 42 d~~~~~vGiit~~di~~~~~ 61 (132)
T d1yava3 42 DPSYRLHGLIGTNMIMNSIF 61 (132)
T ss_dssp CTTCBEEEEEEHHHHHHHHB
T ss_pred ECCCCCCCEEECCHHHHHHH
T ss_conf 02422232788121677764
No 14
>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}
Probab=22.82 E-value=21 Score=14.03 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHCCCCCCCCEEE
Q ss_conf 56543100341078999999860-88768666302656432054
Q gi|254780331|r 96 AGDTGYLYGSVSSRDIADLLIEE-GFDVNRGQINLKSPIKSVGI 138 (179)
Q Consensus 96 ~~e~gkLfGsVt~~dI~~~L~~~-gi~I~k~~I~l~~pIk~~G~ 138 (179)
++++|++.|-||..|+...+... .............|+..+..
T Consensus 39 vd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~ 82 (139)
T d2o16a3 39 VDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMH 82 (139)
T ss_dssp ECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHC
T ss_conf 22564314354499999988763022320354321120667503
No 15
>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.80 E-value=22 Score=13.91 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 6543100341078999999860
Q gi|254780331|r 97 GDTGYLYGSVSSRDIADLLIEE 118 (179)
Q Consensus 97 ~e~gkLfGsVt~~dI~~~L~~~ 118 (179)
.++|++.|-||..||...+...
T Consensus 47 d~~~~~vG~it~~Di~~~~~~~ 68 (140)
T d2nyca1 47 DENGYLINVYEAYDVLGLIKGG 68 (140)
T ss_dssp CTTCBEEEEEEHHHHHHHHHTC
T ss_pred ECCCEECCEEHHHHHHHHHHHC
T ss_conf 3399183334046789988604
No 16
>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=21.12 E-value=22 Score=13.82 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=16.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHC
Q ss_conf 543100341078999999860
Q gi|254780331|r 98 DTGYLYGSVSSRDIADLLIEE 118 (179)
Q Consensus 98 e~gkLfGsVt~~dI~~~L~~~ 118 (179)
++|+++|-||..|+...+.+.
T Consensus 42 d~~~~~Givt~~dl~~~~~~~ 62 (127)
T d2ef7a1 42 DGNKPVGIITERDIVKAIGKG 62 (127)
T ss_dssp ETTEEEEEEEHHHHHHHHHTT
T ss_pred CCCCHHHHCCHHHHHHHHHHH
T ss_conf 263023204301788998750
No 17
>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}
Probab=20.71 E-value=19 Score=14.32 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=25.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCC-CEEEEEEEE
Q ss_conf 5431003410789999998608876866630265643-205499999
Q gi|254780331|r 98 DTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPIK-SVGIHNIMI 143 (179)
Q Consensus 98 e~gkLfGsVt~~dI~~~L~~~gi~I~k~~I~l~~pIk-~~G~y~V~I 143 (179)
.+|.| |-++..++...+.+.=+.++...+ .+||+ .+|-|-+.|
T Consensus 45 ~gG~l-G~~~~~~l~~~f~~~~~~l~~G~v--s~pi~t~~G~HIikv 88 (92)
T d1jnsa_ 45 RGGDL-GEFRQGQMVPAFDKVVFSCPVLEP--TGPLHTQFGYHIIKV 88 (92)
T ss_dssp TGGGC-CEEETTSSCHHHHHHHHHSCTTCC--EEEEEETTEEEEEEE
T ss_pred HHHHH-CEEEHHHHHHHHHHHHHHCCCCCC--CCCEEECCEEEEEEE
T ss_conf 23100-013386632379999982899984--777895994899999
No 18
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.13 E-value=24 Score=13.69 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCHHHHHHHH
Q ss_conf 6543100341078999999
Q gi|254780331|r 97 GDTGYLYGSVSSRDIADLL 115 (179)
Q Consensus 97 ~e~gkLfGsVt~~dI~~~L 115 (179)
+++|++-|-||..||...+
T Consensus 43 d~~~~~~Giit~~di~~~~ 61 (132)
T d2yzia1 43 NDDGNVVGFFTKSDIIRRV 61 (132)
T ss_dssp CTTSCEEEEEEHHHHHHHT
T ss_pred CCCCEEEEEEEHHHHHHHH
T ss_conf 4552000444378999887
Done!