RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9 [Candidatus Liberibacter asiaticus str. psy62] (179 letters) >3i1n_H 50S ribosomal protein L9; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_F 1p86_F 1vs8_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vs6_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H 2qox_H ... (H:) Length = 149 Score = 131 bits (332), Expect = 4e-32 Identities = 55/146 (37%), Positives = 87/146 (59%), Gaps = 2/146 (1%) Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLE 73 M+VILL V NLG +G+ V VK GYARN+L+P+ KA+ A K+N FE++R+ LEA E Sbjct: 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60 Query: 74 KKAKYEGISKDLAKKNFSLIRA-AGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINL-KS 131 A ++ + I + AGD G L+GS+ +RDIAD + G +V + ++ L Sbjct: 61 VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 120 Query: 132 PIKSVGIHNIMISLHADVSTTITLNV 157 +++ G H + +H++V + +NV Sbjct: 121 VLRTTGEHEVSFQVHSEVFAKVIVNV 146 >1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (F:) Length = 146 Score = 129 bits (327), Expect = 2e-31 Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 2/144 (1%) Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRANKENKILFESQRSVLEAANLE 73 M+VILL+ LG GEVV VK+GYARN+L+P+ A+ A + N E+Q +E + Sbjct: 1 MQVILLEPS-RLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQ 59 Query: 74 KKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVNRGQINLKSPI 133 +KA E ++ L L AG+ G +YG+V+ +D+A+ L + GFDV+R +I++ + Sbjct: 60 EKAVAEDLASRLNGVAVELSVRAGE-GKIYGAVTHQDVANSLDQLGFDVDRRKIDMPKTV 118 Query: 134 KSVGIHNIMISLHADVSTTITLNV 157 K VG ++I H +V+ + L V Sbjct: 119 KEVGEYDIAYRAHPEVTIPMKLVV 142 >1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus stearothermophilus} (A:40-149) Length = 110 Score = 87.8 bits (218), Expect = 7e-19 Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 1/107 (0%) Query: 54 KENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIAD 113 N E+Q+ + E+ A + + + L K ++ AG+ G L+GS++S+ IA+ Sbjct: 2 PANLKALEAQKQKEQRQAAEELANAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAE 61 Query: 114 LLIE-EGFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNVAR 159 L G +++ +I L I+++G N+ + LH +V+ T+ ++V Sbjct: 62 SLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPEVTATLKVHVTE 108 >2j01_I 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (I:41-148) Length = 106 Score = 83.2 bits (206), Expect = 2e-17 Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 2/105 (1%) Query: 54 KENKILFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIAD 113 + N E++ E+KA+ E + + L ++ AG+ +YGSV+++DIA+ Sbjct: 1 ESNLKALEARIRAQAKRLAERKAEAERLKEILENLTLTIPVRAGE-TKIYGSVTAKDIAE 59 Query: 114 LLIEE-GFDVNRGQINLKSPIKSVGIHNIMISLHADVSTTITLNV 157 L + G ++ ++ L+ PIK +G + + H +V + ++V Sbjct: 60 ALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEVPIQLKVSV 104 >3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (J:122-197) Length = 76 Score = 69.6 bits (171), Expect = 2e-13 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 88 KNFSLIRAAGDTGYLYGSVSSRDIADLLIEE-GFDVNRGQINLKSPIKSVGIHNIMISLH 146 F + R G ++GSV+++D+ D++ + D+++ ++L I+ G + + LH Sbjct: 4 GAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLP-EIRETGEYIAELKLH 62 Query: 147 ADVSTTITLNV 157 DV+ + +NV Sbjct: 63 PDVTARVKINV 73 >2j01_I 50S ribosomal protein L9; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (I:1-40) Length = 40 Score = 67.6 bits (166), Expect = 1e-12 Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRAN 53 M+VILL+ + NLG +G+VV VK GYARNYLLP+ A+ A Sbjct: 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLAT 40 >2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} (A:1-39) Length = 39 Score = 67.2 bits (165), Expect = 1e-12 Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRA 52 M+VI L++V +G GE+ V +GYA N+L + A+ A Sbjct: 1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEA 39 >1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Bacillus stearothermophilus} (A:1-39) Length = 39 Score = 67.2 bits (165), Expect = 1e-12 Identities = 16/39 (41%), Positives = 24/39 (61%) Query: 14 MEVILLQNVTNLGPMGEVVKVKNGYARNYLLPKKKALRA 52 M+VI L++V G GE+ V +GYA N+L + A+ A Sbjct: 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEA 39 >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A (A:132-256) Length = 125 Score = 26.2 bits (56), Expect = 2.4 Identities = 2/20 (10%), Positives = 7/20 (35%) Query: 110 DIADLLIEEGFDVNRGQINL 129 +I +++ F + Sbjct: 104 EIFRHILQREFSGAAAHHHH 123 >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, structural genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} (A:37-98) Length = 62 Score = 26.1 bits (58), Expect = 2.7 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 12/57 (21%) Query: 65 SVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFD 121 S+ EAA L + G + G + RD+ + +G Sbjct: 9 SIGEAAGT------------LHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAA 53 >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase; HET: FAD; 1.70A {Bos taurus} (A:114-329) Length = 216 Score = 26.2 bits (57), Expect = 2.8 Identities = 3/44 (6%), Positives = 10/44 (22%) Query: 81 ISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVNR 124 + ++I G+ + L + + Sbjct: 25 ELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAAL 68 >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} (A:19-74) Length = 56 Score = 26.1 bits (58), Expect = 3.3 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 12/59 (20%) Query: 65 SVLEAANLEKKAKYEGISKDLAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFDVN 123 ++ AA + + + GD L+G ++ RDI + G D N Sbjct: 8 TLTAAAQYX------------REHDIGALPICGDDDRLHGXLTDRDIVIKGLAAGLDPN 54 >2dvw_A 26S proteasome non-ATPase regulatory subunit 10; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.30A {Mus musculus} PDB: 2dwz_A* 1tr4_A 1uoh_A 1qym_A (A:99-231) Length = 133 Score = 25.9 bits (55), Expect = 3.5 Identities = 3/22 (13%), Positives = 8/22 (36%) Query: 102 LYGSVSSRDIADLLIEEGFDVN 123 L + + + EG + + Sbjct: 111 LQVAKGGLGLILKRLAEGEEAS 132 >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} (A:16-89) Length = 74 Score = 25.2 bits (55), Expect = 4.9 Identities = 7/37 (18%), Positives = 15/37 (40%) Query: 85 LAKKNFSLIRAAGDTGYLYGSVSSRDIADLLIEEGFD 121 L + S + + GYL + D+ L+ ++ Sbjct: 22 LTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN 58 >2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix bundle, heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A (A:1-73,A:234-308) Length = 148 Score = 24.8 bits (54), Expect = 6.8 Identities = 10/59 (16%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 120 FDVNRGQINLKSPIKSVGIHNI-MISLHADVSTTITLNVARSTEEMVKQDILGEHEEEI 177 FD R +N+++ IK+ G+ + ++++ + S ++A + + K+++ + + Sbjct: 2 FDAERDALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSAL 60 >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} (A:18-74) Length = 57 Score = 24.6 bits (54), Expect = 7.6 Identities = 5/26 (19%), Positives = 8/26 (30%) Query: 98 DTGYLYGSVSSRDIADLLIEEGFDVN 123 L G ++ RD + V Sbjct: 30 KDEKLVGILTERDFSRKSYLLDKPVK 55 >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} (A:333-464) Length = 132 Score = 24.5 bits (53), Expect = 8.1 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%) Query: 84 DLAKKNFSLI---RAAGDTGYLYGSVSSRDIADLLIEEGF 120 D A + L R GD L G+ ++ + ++ IE Sbjct: 44 DPASVSLPLRVRTRRRGDRMVLKGTGGTKKLKEIFIEAKI 83 >3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} (A:179-332) Length = 154 Score = 24.7 bits (54), Expect = 8.4 Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 59 LFESQRSVLEAANLEKKAKYEGISKDLAKKNFSLIRAA 96 L + L+ N + K + G SK +A LI+AA Sbjct: 111 LLDHVLLTLQKPNPDLKQQLTGHSKRVAGSVTELIQAA 148 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.312 0.131 0.345 Gapped Lambda K H 0.267 0.0576 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,200,157 Number of extensions: 48669 Number of successful extensions: 174 Number of sequences better than 10.0: 1 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 27 Length of query: 179 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 96 Effective length of database: 2,150,234 Effective search space: 206422464 Effective search space used: 206422464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 52 (24.1 bits)