HHsearch alignment for GI: 254780332 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=93.64 E-value=0.65 Score=26.39 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHH-HC-CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 433677899999874-11-2366443210137765564167726776213100276999999999985101112333332
Q gi|254780332|r 180 DAMTVAIDMAGQAFN-RD-GRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSY 257 (504)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~-~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~ 257 (504)
T Consensus 160 ~~L~ky~~dLT~~A~~GklDpvIGRd~EI~r~i~IL~-RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~-VP~~----- 232 (823)
T CHL00095 160 PTLEEFGNNLTKMAYEGNLDPVIGRDKEIERVIQILG-RRTKNNPILIGEPGVGKTAIAEGLAQRIANRD-VPDI----- 232 (823)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-HHCCCCCEEECCCCCCHHHHHHHHHHHHHCCC-CCHH-----
T ss_conf 5699997888999983899987595699999999997-73248850237999879999999999760889-9868-----
Q ss_pred CCCCCCEEEEEECCCCHH--------HHHHHHHHHHHH
Q ss_conf 124797589995852179--------998789999874
Q gi|254780332|r 258 KTINGGIVGFYSLEMSSE--------QLATRIISEQTE 287 (504)
Q Consensus 258 ~~~~g~~Vl~fSlEMs~~--------el~~R~is~~s~ 287 (504)
T Consensus 233 ----L~~~~i~sLDl~~L~AGtkyRGeFEeRlk~il~e 266 (823)
T CHL00095 233 ----LEDKLVLTLDIGLLLAGTKYRGEFEERIKKIMDE 266 (823)
T ss_pred ----HCCCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf ----7599368842887753342226799999999999