HHsearch alignment for GI: 254780332 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=99.12 E-value=7.4e-08 Score=79.28 Aligned_cols=214 Identities=23% Similarity=0.281 Sum_probs=129.9
Q ss_pred CCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 664432101377655-6416772677621310027699999999998510111233333212479758999585217999
Q gi|254780332|r 199 LAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQL 277 (504)
Q Consensus 199 ~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el 277 (504)
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~---------------~g~~a~fIDtE~~---- 99 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK---------------PGGKAAFIDTEHA---- 99 (279)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEECCCC----
T ss_conf 660165505578774688655358998468876546689999888653---------------7980899958999----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCC--CCCEEEECCHHHC
Q ss_conf 87899998741011000121376889989999999862780782589988999999886402244--4746776713532
Q gi|254780332|r 278 ATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQR--GLDLLIVDYIQLM 355 (504)
Q Consensus 278 ~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~--gi~~vvIDYLqli 355 (504)
T Consensus 100 --------------------l~p~r~~~l~~~~----~d~l~v~~~~--~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 100 --------------------LDPERAKQLGVDL----LDNLLVSQPD--TGEQQLEIAEKLARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred --------------------CCHHHHHHHHHHH----HCCEEEECCC--CHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf --------------------8999999988754----2153686689--7799999999998754688788998257434
Q ss_pred CCCC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCHHHHHCCEEEEEECH
Q ss_conf 5664----43211378899999999999988279199977138220168--99998401014324223313878897255
Q gi|254780332|r 356 TTSK----KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR--DNKRPQLSDLRESGSIEQDADVVLFVIRD 429 (504)
Q Consensus 356 ~~~~----~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r--~~krP~lsDLr~Sg~IEqdAD~v~~l~R~ 429 (504)
T Consensus 154 ~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~-----GG~~L~~~as~rl~l~k~ 228 (279)
T COG0468 154 VRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTT-----GGNALKFYASVRLDLRRI 228 (279)
T ss_pred CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCC-----CCHHHHHHHHEEEEEEEC
T ss_conf 636554853489999999999999999999749589997840340676668866587-----723887553247776522
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE-EEE--EEEECC
Q ss_conf 661644233332221110000001123388389999740899725-999--997468
Q gi|254780332|r 430 EYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG-TVT--LAFQAE 483 (504)
Q Consensus 430 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g-~~~--~~f~~~ 483 (504)
T Consensus 229 ~-------~~~-------------~~-~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~ 264 (279)
T COG0468 229 E-------SLK-------------ED-VGNKRRVKVVKNKVAPPFKEAEFDITYGGG 264 (279)
T ss_pred C-------CCC-------------CC-CCCEEEEEEEECCCCCCCCEEEEEEECCCC
T ss_conf 4-------432-------------35-687389999747989987656899650764