HHsearch alignment for GI: 254780332 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=97.67 E-value=0.0062 Score=41.78 Aligned_cols=145 Identities=23% Similarity=0.294 Sum_probs=93.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC--CHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 67726776213100276999999999985101112333332124797589995852--1799987899998741011000
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM--SSEQLATRIISEQTEVPSSKIR 294 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM--s~~el~~R~is~~s~I~~~~i~ 294 (504)
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk---------------~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~ 162 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK---------------KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG 162 (451)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCC
T ss_conf 99858999815679748689999999997---------------499458985056786899999999986098531677
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC--CEEEECCCC-CCHH-HHHHHHHHHCCCCCCC--EEEECCHHHCCCCCCCCCHHHHH
Q ss_conf 1213768899899999998627--807825899-8899-9999886402244474--67767135325664432113788
Q gi|254780332|r 295 RGELTRPDYEKIVACSQVMQKL--PLYIDQTGG-ISMS-QLATRARRLKRQRGLD--LLIVDYIQLMTTSKKIEENRVLE 368 (504)
Q Consensus 295 ~g~l~~~e~~~i~~a~~~l~~~--~l~I~d~~~-~ti~-~I~~~~r~~~~~~gi~--~vvIDYLqli~~~~~~~~~r~~~ 368 (504)
T Consensus 163 ~-~~~Pv~--Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam--------~G----Qd 227 (451)
T COG0541 163 T-EKDPVE--IAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM--------IG----QD 227 (451)
T ss_pred C-CCCHHH--HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC--------CC----HH
T ss_conf 8-899799--999999999974998899968873303099999999998553987489987644--------45----67
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99999999999988279199977138
Q gi|254780332|r 369 ITGITMALKALAKELNIPIIALSQLS 394 (504)
Q Consensus 369 i~~is~~lK~lA~e~~ipvi~lsQLn 394 (504)
T Consensus 228 A~~~---A~aF~e~l~itGvIlTKlD 250 (451)
T COG0541 228 AVNT---AKAFNEALGITGVILTKLD 250 (451)
T ss_pred HHHH---HHHHHHHCCCCEEEEECCC
T ss_conf 8999---9998662698649997146