HHsearch alignment for GI: 254780332 and conserved domain: COG1066
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones].
Probab=99.77 E-value=1.2e-16 Score=146.18 Aligned_cols=208 Identities=26% Similarity=0.409 Sum_probs=152.8
Q ss_pred CCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 64432101377655-64167726776213100276999999999985101112333332124797589995852179998
Q gi|254780332|r 200 AGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLA 278 (504)
Q Consensus 200 ~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~ 278 (504)
T Consensus 73 ~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~---------------~-~vLYVsGEES~~Qik 136 (456)
T COG1066 73 PRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---------------G-KVLYVSGEESLQQIK 136 (456)
T ss_pred CCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHC---------------C-CEEEEECCCCHHHHH
T ss_conf 423578188876536772366179973689877989999999998705---------------9-579996776789999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf 78999987410110001213768899899999998627807825899889999998864022444746776713532566
Q gi|254780332|r 279 TRIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 279 ~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
T Consensus 137 lRA~--RL~~~~-------------------------~~l~l--~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 137 LRAD--RLGLPT-------------------------NNLYL--LAETNLEDIIAELEQ----EKPDLVVIDSIQTLYSE 183 (456)
T ss_pred HHHH--HHCCCC-------------------------CCEEE--EHHCCHHHHHHHHHH----CCCCEEEEECCCEECCC
T ss_conf 9999--828996-------------------------45577--411289999999985----49978999654123026
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf 44-32113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r 359 KK-IEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE 437 (504)
Q Consensus 359 ~~-~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~ 437 (504)
T Consensus 184 ~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG~-----------IAGPrvLEHmVDtVlyFEGd~------- 245 (456)
T COG1066 184 EITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEGA-----------IAGPRVLEHMVDTVLYFEGDR------- 245 (456)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC-----------CCCCHHEEEEEEEEEEEECCC-------
T ss_conf 33579985899999999999999875973999988824663-----------268400436536899983057-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEECCCCC
Q ss_conf 333222111000000112338838999974089972599999746854020077446
Q gi|254780332|r 438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSALSDSS 494 (504)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~~~~~~ 494 (504)
T Consensus 246 -------------------~~~~RiLR~vKNRFG~t~EiGv-FeM~~~GL~eV~npS 282 (456)
T COG1066 246 -------------------HSRYRILRSVKNRFGATNELGV-FEMTENGLREVSNPS 282 (456)
T ss_pred -------------------CCCEEEEEHHCCCCCCCCCEEE-EEEECCCEEEECCCH
T ss_conf -------------------7755650032136776553268-898438846803827