HHsearch alignment for GI: 254780332 and conserved domain: COG1110

Probab=97.43  E-value=0.0032  Score=43.94  Aligned_cols=123  Identities=20%  Similarity=0.228  Sum_probs=75.1

Q ss_pred             HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEEECCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             6416772677621310027699999999998510111233333212479758-999585217999878999987410110
Q gi|254780332|r  214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIV-GFYSLEMSSEQLATRIISEQTEVPSSK  292 (504)
Q Consensus       214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~V-l~fSlEMs~~el~~R~is~~s~I~~~~  292 (504)
T Consensus        92 kR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k---------------gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~  156 (1187)
T COG1110          92 KRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK---------------GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLD  156 (1187)
T ss_pred             HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             998737844898278876547999999998755---------------87499996678999999999999886537852


Q ss_pred             C---CCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHH-HCCCC
Q ss_conf             0---012137688998999999986278078258998899999988640224447467767135-32566
Q gi|254780332|r  293 I---RRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQ-LMTTS  358 (504)
Q Consensus       293 i---~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLq-li~~~  358 (504)
T Consensus       157 ~~~~yh~~l~~~eke---e~le~i~~gdfdIlit---Ts~FL~k~~e~L~~-~kFdfifVDDVDA~Lkas  219 (1187)
T COG1110         157 VLVVYHSALPTKEKE---EALERIESGDFDILIT---TSQFLSKRFEELSK-LKFDFIFVDDVDAILKAS  219 (1187)
T ss_pred             EEEEECCCCCHHHHH---HHHHHHHCCCCCEEEE---EHHHHHHHHHHHCC-CCCCEEEECCHHHHHHCC
T ss_conf             466531236657799---9999986599639997---47878866998404-577789980478898634