HHsearch alignment for GI: 254780332 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=95.76 E-value=0.2 Score=30.28 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC--HHHHHHH
Q ss_conf 32101377655641677267762131002769999999999851011123333321247975899958521--7999878
Q gi|254780332|r 203 STGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMS--SEQLATR 280 (504)
Q Consensus 203 ~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs--~~el~~R 280 (504)
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~------------~~~~~r~i~vlP~~t~ie~~~~r 265 (733)
T COG1203 198 ELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK------------IKLKSRVIYVLPFRTIIEDMYRR 265 (733)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC------------CCCCCEEEEECCHHHHHHHHHHH
T ss_conf 556799999873225575189991688871999999999975311------------35456289965589999999999
Q ss_pred HHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCEEEEC--------CCCCCHHHHHH-HHHHHCCC----CCCCE
Q ss_conf 9999874101100-01213768899899999998627807825--------89988999999-88640224----44746
Q gi|254780332|r 281 IISEQTEVPSSKI-RRGELTRPDYEKIVACSQVMQKLPLYIDQ--------TGGISMSQLAT-RARRLKRQ----RGLDL 346 (504)
Q Consensus 281 ~is~~s~I~~~~i-~~g~l~~~e~~~i~~a~~~l~~~~l~I~d--------~~~~ti~~I~~-~~r~~~~~----~gi~~ 346 (504)
T Consensus 266 ~~~~~~~~~~~~~~~h~~~-~~~~---~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 266 AKEIFGLFSVIGKSLHSSS-KEPL---LLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred HHHHHCCCCCCCCCCCCCC-HHHH---HHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 9875123554331001310-2556---51701002258881242236204522206999855740466725778876467
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 7767135325664432113788999999999999882791999771
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQ 392 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ 392 (504)
T Consensus 342 vIlDE~h~~~~~~---~~-----~~l~~-~i~~l~~~g~~ill~SA 378 (733)
T COG1203 342 VILDEVHLYADET---ML-----AALLA-LLEALAEAGVPVLLMSA 378 (733)
T ss_pred EEEECHHHCCCCC---HH-----HHHHH-HHHHHHHCCCCEEEEEC
T ss_conf 7874275416543---08-----99999-99999968997899927