HHsearch alignment for GI: 254780332 and conserved domain: COG1245
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only].
Probab=97.22 E-value=0.0023 Score=45.11 Aligned_cols=201 Identities=17% Similarity=0.259 Sum_probs=110.0
Q ss_pred CCCCHHHHHHHHHH---------CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE--CC
Q ss_conf 32101377655641---------67726776213100276999999999985101112333332124797589995--85
Q gi|254780332|r 203 STGIQTLDKQMGGL---------QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS--LE 271 (504)
Q Consensus 203 ~TG~~~LD~~~gGl---------~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS--lE 271 (504)
T Consensus 342 lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kPdeg----~-~~~~~vSyKPQyI~~~~~ 415 (591)
T COG1245 342 LVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KPDEG----S-EEDLKVSYKPQYISPDYD 415 (591)
T ss_pred EEECCHHEEECCCEEEEECCCEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCCC----C-CCCCEEECCCEEECCCCC
T ss_conf 66210020103765899538746335489998888754677999985662-57878----8-765147505534037899
Q ss_pred CCHHHHHHHHHHHHHH-----------HCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCEEEECCCC--CCHHH--HH-
Q ss_conf 2179998789999874-----------10110001---213768899899999998627807825899--88999--99-
Q gi|254780332|r 272 MSSEQLATRIISEQTE-----------VPSSKIRR---GELTRPDYEKIVACSQVMQKLPLYIDQTGG--ISMSQ--LA- 332 (504)
Q Consensus 272 Ms~~el~~R~is~~s~-----------I~~~~i~~---g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~--~ti~~--I~- 332 (504)
T Consensus 416 gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 416 GTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred CCHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHHHHHH
T ss_conf 82999998743000145056776407446477874603457732588999999865656778865843430689999999
Q ss_pred HHHHHHCCCCC-------CCEEEECCHH--HCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 98864022444-------7467767135--32566443211-37889999999999998827919997713822016899
Q gi|254780332|r 333 TRARRLKRQRG-------LDLLIVDYIQ--LMTTSKKIEEN-RVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN 402 (504)
Q Consensus 333 ~~~r~~~~~~g-------i~~vvIDYLq--li~~~~~~~~~-r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~ 402 (504)
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~l~vTF------RRD~~---t 566 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNLGVTF------RRDPE---T 566 (591)
T ss_pred HHHHHHHHCCCCEEEEEECCEEHHHHHHCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEE------ECCCC---C
T ss_conf 99999986067538999530004335411278970688756768997128899999999759579------40755---6
Q ss_pred CCCCCCCCCCCCHHHH
Q ss_conf 9984010143242233
Q gi|254780332|r 403 KRPQLSDLRESGSIEQ 418 (504)
Q Consensus 403 krP~lsDLr~Sg~IEq 418 (504)
T Consensus 567 ~RPRvNK~gS~lDreQ 582 (591)
T COG1245 567 GRPRVNKPGSQLDREQ 582 (591)
T ss_pred CCCCCCCCCCHHHHHH
T ss_conf 8987688740455888