HHsearch alignment for GI: 254780332 and conserved domain: COG2874
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=98.70 E-value=6.3e-07 Score=72.22 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=133.7
Q ss_pred CCCCCHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 4321013776556-416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQMG-GLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~g-Gl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
T Consensus 10 i~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~---------------~g~~v~yvsTe~T~refi~q 74 (235)
T COG2874 10 IKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLM---------------NGYRVTYVSTELTVREFIKQ 74 (235)
T ss_pred CCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEECHHHHHHHHH
T ss_conf 067847778651699746769999888985488999999998870---------------89548999840359999998
Q ss_pred HHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHCCEEEECCCCC-CHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 9999874101100012137--688998999999986278078258998-8999999886402244474677671353256
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELT--RPDYEKIVACSQVMQKLPLYIDQTGGI-SMSQLATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~--~~e~~~i~~a~~~l~~~~l~I~d~~~~-ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
T Consensus 75 m~sl~ydv~~~-~l~G~l~~~~~~~------------~~~~~~~~~~~~~L~~l~~~~----k~~~~dViIIDSls~~~~ 137 (235)
T COG2874 75 MESLSYDVSDF-LLSGRLLFFPVNL------------EPVNWGRRSARKLLDLLLEFI----KRWEKDVIIIDSLSAFAT 137 (235)
T ss_pred HHHCCCCCHHH-HHCCEEEEEEECC------------CCCCCCHHHHHHHHHHHHHHH----HHHCCCEEEEECCCHHHH
T ss_conf 88638871687-7506268999324------------542257377899999997557----752377899953437765
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE--CCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCC
Q ss_conf 64432113788999999999999882791999771--3822016899998401014324223313878897255661644
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQ--LSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRN 435 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQ--LnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~ 435 (504)
T Consensus 138 ~~-----~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~---------------~~rirs~~d~~l~L~~~~~Gg~- 196 (235)
T COG2874 138 YD-----SEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDV---------------LTRIRSACDVYLRLRLEELGGD- 196 (235)
T ss_pred CC-----CHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHH---------------HHHHHHHHHEEEEEEHHHHCCE-
T ss_conf 26-----49999999999999872897899994734337899---------------9999875202589870231784-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--CE-EEEEEEECCCC
Q ss_conf 2333322211100000011233883899997408997--25-99999746854
Q gi|254780332|r 436 KEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGP--TG-TVTLAFQAEFT 485 (504)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~--~g-~~~~~f~~~~~ 485 (504)
T Consensus 197 ---------------------~~~~--~~i~K~~ga~~s~~~~I~F~V~P~~G 226 (235)
T COG2874 197 ---------------------LIKV--LEIVKYRGARKSFQNIISFRVEPGFG 226 (235)
T ss_pred ---------------------EEEE--EEEEEECCCHHHCCCCEEEEECCCCC
T ss_conf ---------------------5587--78766547133217740588559875