HHsearch alignment for GI: 254780332 and conserved domain: COG3598
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=98.71 E-value=1.2e-06 Score=70.08 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=102.7
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 41677267762131002769999999999851011123333321247975899958521799987899998741011000
Q gi|254780332|r 215 GLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIR 294 (504)
Q Consensus 215 Gl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~ 294 (504)
T Consensus 85 ~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG-----~~v~epGkvlyvslEl~re~~L~Rl~~v~a~m------ 153 (402)
T COG3598 85 FFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFG-----NKVKEPGKVLYVSLELYREDILERLEPVRARM------ 153 (402)
T ss_pred HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-----CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHC------
T ss_conf 7651705898448862376899999999986477745-----33558880799982268688999999999870------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCCHHHHHHHHHHH---CCCCCCCEEEECCHHHCCCCCCCCCHHHHHHH
Q ss_conf 121376889989999999862780782589-98899999988640---22444746776713532566443211378899
Q gi|254780332|r 295 RGELTRPDYEKIVACSQVMQKLPLYIDQTG-GISMSQLATRARRL---KRQRGLDLLIVDYIQLMTTSKKIEENRVLEIT 370 (504)
Q Consensus 295 ~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~I~~~~r~~---~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~ 370 (504)
T Consensus 154 --gLsPadvrn~dl--td~~Ga----a~~~d~l~p----kl~rRfek~~~Q~rp~~vViDp~v~f~-~G~--s~s~vqv~ 218 (402)
T COG3598 154 --GLSPADVRNMDL--TDVSGA----ADESDVLSP----KLYRRFEKILEQKRPDFVVIDPFVAFY-EGK--SISDVQVK 218 (402)
T ss_pred --CCCHHHHHHEEC--CCCCCC----CCCCCCCCH----HHHHHHHHHHHHHCCCEEEECCHHHHC-CCC--CCHHHHHH
T ss_conf --998576322000--024567----872001058----999999999987478749973445422-774--11168999
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 99999999998827919997713822016
Q gi|254780332|r 371 GITMALKALAKELNIPIIALSQLSRQVEN 399 (504)
Q Consensus 371 ~is~~lK~lA~e~~ipvi~lsQLnR~~e~ 399 (504)
T Consensus 219 ~fi~~~rkla~~l~caIiy~hHtskss~~ 247 (402)
T COG3598 219 EFIKKTRKLARNLECAIIYIHHTSKSSGK 247 (402)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 99999999998627739999445656677