HHsearch alignment for GI: 254780332 and conserved domain: COG3598

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=98.71  E-value=1.2e-06  Score=70.08  Aligned_cols=159  Identities=19%  Similarity=0.238  Sum_probs=102.7

Q ss_pred             HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             41677267762131002769999999999851011123333321247975899958521799987899998741011000
Q gi|254780332|r  215 GLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIR  294 (504)
Q Consensus       215 Gl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~  294 (504)
T Consensus        85 ~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG-----~~v~epGkvlyvslEl~re~~L~Rl~~v~a~m------  153 (402)
T COG3598          85 FFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFG-----NKVKEPGKVLYVSLELYREDILERLEPVRARM------  153 (402)
T ss_pred             HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-----CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHC------
T ss_conf             7651705898448862376899999999986477745-----33558880799982268688999999999870------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCEEEECCC-CCCHHHHHHHHHHH---CCCCCCCEEEECCHHHCCCCCCCCCHHHHHHH
Q ss_conf             121376889989999999862780782589-98899999988640---22444746776713532566443211378899
Q gi|254780332|r  295 RGELTRPDYEKIVACSQVMQKLPLYIDQTG-GISMSQLATRARRL---KRQRGLDLLIVDYIQLMTTSKKIEENRVLEIT  370 (504)
Q Consensus       295 ~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~-~~ti~~I~~~~r~~---~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~  370 (504)
T Consensus       154 --gLsPadvrn~dl--td~~Ga----a~~~d~l~p----kl~rRfek~~~Q~rp~~vViDp~v~f~-~G~--s~s~vqv~  218 (402)
T COG3598         154 --GLSPADVRNMDL--TDVSGA----ADESDVLSP----KLYRRFEKILEQKRPDFVVIDPFVAFY-EGK--SISDVQVK  218 (402)
T ss_pred             --CCCHHHHHHEEC--CCCCCC----CCCCCCCCH----HHHHHHHHHHHHHCCCEEEECCHHHHC-CCC--CCHHHHHH
T ss_conf             --998576322000--024567----872001058----999999999987478749973445422-774--11168999


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf             99999999998827919997713822016
Q gi|254780332|r  371 GITMALKALAKELNIPIIALSQLSRQVEN  399 (504)
Q Consensus       371 ~is~~lK~lA~e~~ipvi~lsQLnR~~e~  399 (504)
T Consensus       219 ~fi~~~rkla~~l~caIiy~hHtskss~~  247 (402)
T COG3598         219 EFIKKTRKLARNLECAIIYIHHTSKSSGK  247 (402)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             99999999998627739999445656677