HHsearch alignment for GI: 254780332 and conserved domain: COG3842
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].
Probab=96.80 E-value=0.0075 Score=41.18 Aligned_cols=149 Identities=13% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH-HHHHCCCCCCCC---CCCCCCCCCEEE--------------
Q ss_conf 10137765564167726776213100276999999999-985101112333---332124797589--------------
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYN-VADAYKAELQTD---GSYKTINGGIVG-------------- 266 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~-~A~~~~~~~~~~---~~~~~~~g~~Vl-------------- 266 (504)
T Consensus 17 ~~~al~~isl~i~~Gef~tlLGPSGcGKTTlLR~IAGfe~p~~G~I~l~g~~i~~lpp~kR~ig~VFQ~YALFPHmtV~~ 96 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEE 96 (352)
T ss_pred CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCCCEEECCCCCCCCCCHHH
T ss_conf 72677321445448868999899888889999999677788886599999998889942265232606766688885899
Q ss_pred --EEECC----CCHHHHHHHHHHHHHHHCCCCCCC--C-CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH-----HHH
Q ss_conf --99585----217999878999987410110001--2-137688998999999986278078258998899-----999
Q gi|254780332|r 267 --FYSLE----MSSEQLATRIISEQTEVPSSKIRR--G-ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS-----QLA 332 (504)
Q Consensus 267 --~fSlE----Ms~~el~~R~is~~s~I~~~~i~~--g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~-----~I~ 332 (504)
T Consensus 97 NVafGLk~~~~~~~~ei~~rV~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr 176 (352)
T COG3842 97 NVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176 (352)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHH
T ss_conf 75533310577877899999999998748544444276664827899999999742183544342740023189999999
Q ss_pred HHHHHHCCCCCCCEEEECCHH
Q ss_conf 988640224447467767135
Q gi|254780332|r 333 TRARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 333 ~~~r~~~~~~gi~~vvIDYLq 353 (504)
T Consensus 177 ~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 177 KELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred HHHHHHHHHCCCEEEEEECCH
T ss_conf 999999985597299997898