HHsearch alignment for GI: 254780332 and conserved domain: COG3842

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].
Probab=96.80  E-value=0.0075  Score=41.18  Aligned_cols=149  Identities=13%  Similarity=0.176  Sum_probs=77.0

Q ss_pred             CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH-HHHHCCCCCCCC---CCCCCCCCCEEE--------------
Q ss_conf             10137765564167726776213100276999999999-985101112333---332124797589--------------
Q gi|254780332|r  205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYN-VADAYKAELQTD---GSYKTINGGIVG--------------  266 (504)
Q Consensus       205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~-~A~~~~~~~~~~---~~~~~~~g~~Vl--------------  266 (504)
T Consensus        17 ~~~al~~isl~i~~Gef~tlLGPSGcGKTTlLR~IAGfe~p~~G~I~l~g~~i~~lpp~kR~ig~VFQ~YALFPHmtV~~   96 (352)
T COG3842          17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEE   96 (352)
T ss_pred             CEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCCCEEECCCCCCCCCCHHH
T ss_conf             72677321445448868999899888889999999677788886599999998889942265232606766688885899


Q ss_pred             --EEECC----CCHHHHHHHHHHHHHHHCCCCCCC--C-CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHH-----HHH
Q ss_conf             --99585----217999878999987410110001--2-137688998999999986278078258998899-----999
Q gi|254780332|r  267 --FYSLE----MSSEQLATRIISEQTEVPSSKIRR--G-ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMS-----QLA  332 (504)
Q Consensus       267 --~fSlE----Ms~~el~~R~is~~s~I~~~~i~~--g-~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~-----~I~  332 (504)
T Consensus        97 NVafGLk~~~~~~~~ei~~rV~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr  176 (352)
T COG3842          97 NVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR  176 (352)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHH
T ss_conf             75533310577877899999999998748544444276664827899999999742183544342740023189999999


Q ss_pred             HHHHHHCCCCCCCEEEECCHH
Q ss_conf             988640224447467767135
Q gi|254780332|r  333 TRARRLKRQRGLDLLIVDYIQ  353 (504)
Q Consensus       333 ~~~r~~~~~~gi~~vvIDYLq  353 (504)
T Consensus       177 ~Elk~lq~~~giT~i~VTHDq  197 (352)
T COG3842         177 KELKELQRELGITFVYVTHDQ  197 (352)
T ss_pred             HHHHHHHHHCCCEEEEEECCH
T ss_conf             999999985597299997898