HHsearch alignment for GI: 254780332 and conserved domain: COG4963
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].
Probab=95.11 E-value=0.33 Score=28.68 Aligned_cols=181 Identities=20% Similarity=0.208 Sum_probs=91.6
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH-----HHHHHHH-----H
Q ss_conf 64167726776213100276999999999985101112333332124797589995852179-----9987899-----9
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE-----QLATRII-----S 283 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~-----el~~R~i-----s 283 (504)
T Consensus 100 ~~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~-L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~ 178 (366)
T COG4963 100 IAQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVL-LVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDS 178 (366)
T ss_pred HHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE-EEECCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 211032899996058866689999999998641487389-9976888761234307872145898860978760787778
Q ss_pred HHHHHCCC-CC--------CCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHH
Q ss_conf 98741011-00--------0121376889989999999862780782589988999999886402244474677671353
Q gi|254780332|r 284 EQTEVPSS-KI--------RRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQL 354 (504)
Q Consensus 284 ~~s~I~~~-~i--------~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLql 354 (504)
T Consensus 179 ~~~~~~~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~~~--~~~~vV~Dlp~~~~~~t~----~vL~~Sd~iviv~e-~sl 251 (366)
T COG4963 179 LLTRLASGLKLLAAPTELAKNYDLKTGAVERLLDLLRG--SFDFVVVDLPNIWTDWTR----QVLSGSDEIVIVAE-PSL 251 (366)
T ss_pred HHHCCCCCCEEECCCCCHHHHCCCCCCHHHHHHHHHHC--CCCEEEECCCCCCCHHHH----HHHHCCCEEEEEEC-CCH
T ss_conf 98616887633037744565215331269999997640--288389718976625899----99862884999963-638
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 256644321137889999999999998827919997713822016899998401014324223
Q gi|254780332|r 355 MTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIE 417 (504)
Q Consensus 355 i~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IE 417 (504)
T Consensus 252 ~s-------lR--~ak~lld~l~~~r~~~~~p~lv~n~~~~------~~~~~~~dl~~~~~i~ 299 (366)
T COG4963 252 AS-------LR--NAKELLDELKRLRPNDPKPILVLNRVGV------PKRPEPSDLEEILGIE 299 (366)
T ss_pred HH-------HH--HHHHHHHHHHHHCCCCCCCEEEEEECCC------CCCCCHHHHHHHHCCC
T ss_conf 98-------99--9999999999737798895688652278------8899999998884884