HHsearch alignment for GI: 254780332 and conserved domain: COG4988
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=96.67 E-value=0.049 Score=34.93 Aligned_cols=168 Identities=21% Similarity=0.292 Sum_probs=88.4
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH--HHHHHHHHCCCC-
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878--999987410110-
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR--IISEQTEVPSSK- 292 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R--~is~~s~I~~~~- 292 (504)
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~-lL~G~~~~~~G~I-------~vng~~l----~~l~~~~~~k~i~~v~Q~p~lf~gTi 411 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLN-LLLGFLAPTQGEI-------RVNGIDL----RDLSPEAWRKQISWVSQNPYLFAGTI 411 (559)
T ss_pred ECCCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEE-------EECCCCC----CCCCHHHHHHHEEEECCCCCCCCCCH
T ss_conf 5489679998899997899999-9847577778448-------8899310----00687788867246279984056418
Q ss_pred ---CC--CCCCCHHHHHHHHHHHH---HHHH---CCEEEECC-CCCCHHHHHH--HHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf ---00--12137688998999999---9862---78078258-9988999999--8864022444746776713532566
Q gi|254780332|r 293 ---IR--RGELTRPDYEKIVACSQ---VMQK---LPLYIDQT-GGISMSQLAT--RARRLKRQRGLDLLIVDYIQLMTTS 358 (504)
Q Consensus 293 ---i~--~g~l~~~e~~~i~~a~~---~l~~---~~l~I~d~-~~~ti~~I~~--~~r~~~~~~gi~~vvIDYLqli~~~ 358 (504)
T Consensus 412 reNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llD-----EpT 484 (559)
T COG4988 412 RENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLD-----EPT 484 (559)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEC-----CCC
T ss_conf 87773168767899999999982578761677764330215888778999999999998558--88889854-----875
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 359 KKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 359 ~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 485 A~-LD~etE--~~i~~~l~~l~~~-ktvl~itHrl~~~---------------------~~~D~I~vld 528 (559)
T COG4988 485 AH-LDAETE--QIILQALQELAKQ-KTVLVITHRLEDA---------------------ADADRIVVLD 528 (559)
T ss_pred CC-CCHHHH--HHHHHHHHHHHHC-CEEEEEECCHHHH---------------------HCCCEEEEEC
T ss_conf 67-987679--9999999999727-8699997673778---------------------5499899964