HHsearch alignment for GI: 254780332 and conserved domain: COG4988

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=96.67  E-value=0.049  Score=34.93  Aligned_cols=168  Identities=21%  Similarity=0.292  Sum_probs=88.4

Q ss_pred             HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH--HHHHHHHHCCCC-
Q ss_conf             16772677621310027699999999998510111233333212479758999585217999878--999987410110-
Q gi|254780332|r  216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR--IISEQTEVPSSK-  292 (504)
Q Consensus       216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R--~is~~s~I~~~~-  292 (504)
T Consensus       344 ~~~g~~talvG~SGaGKSTLl~-lL~G~~~~~~G~I-------~vng~~l----~~l~~~~~~k~i~~v~Q~p~lf~gTi  411 (559)
T COG4988         344 IKAGQLTALVGASGAGKSTLLN-LLLGFLAPTQGEI-------RVNGIDL----RDLSPEAWRKQISWVSQNPYLFAGTI  411 (559)
T ss_pred             ECCCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEE-------EECCCCC----CCCCHHHHHHHEEEECCCCCCCCCCH
T ss_conf             5489679998899997899999-9847577778448-------8899310----00687788867246279984056418


Q ss_pred             ---CC--CCCCCHHHHHHHHHHHH---HHHH---CCEEEECC-CCCCHHHHHH--HHHHHCCCCCCCEEEECCHHHCCCC
Q ss_conf             ---00--12137688998999999---9862---78078258-9988999999--8864022444746776713532566
Q gi|254780332|r  293 ---IR--RGELTRPDYEKIVACSQ---VMQK---LPLYIDQT-GGISMSQLAT--RARRLKRQRGLDLLIVDYIQLMTTS  358 (504)
Q Consensus       293 ---i~--~g~l~~~e~~~i~~a~~---~l~~---~~l~I~d~-~~~ti~~I~~--~~r~~~~~~gi~~vvIDYLqli~~~  358 (504)
T Consensus       412 reNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llD-----EpT  484 (559)
T COG4988         412 RENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLD-----EPT  484 (559)
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEC-----CCC
T ss_conf             87773168767899999999982578761677764330215888778999999999998558--88889854-----875


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf             443211378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r  359 KKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI  427 (504)
Q Consensus       359 ~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~  427 (504)
T Consensus       485 A~-LD~etE--~~i~~~l~~l~~~-ktvl~itHrl~~~---------------------~~~D~I~vld  528 (559)
T COG4988         485 AH-LDAETE--QIILQALQELAKQ-KTVLVITHRLEDA---------------------ADADRIVVLD  528 (559)
T ss_pred             CC-CCHHHH--HHHHHHHHHHHHC-CEEEEEECCHHHH---------------------HCCCEEEEEC
T ss_conf             67-987679--9999999999727-8699997673778---------------------5499899964