HHsearch alignment for GI: 254780332 and conserved domain: PRK04328
>PRK04328 hypothetical protein; Provisional.
Probab=99.68 E-value=7.9e-15 Score=132.39 Aligned_cols=216 Identities=20% Similarity=0.248 Sum_probs=138.2
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
T Consensus 6 v~TGI~gLD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~---------------~GE~~lyis~eE~~~~l~~~ 70 (250)
T PRK04328 6 VKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ---------------MGEPGIYVALEEHPVQVRRN 70 (250)
T ss_pred ECCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH---------------CCCCEEEEEEECCHHHHHHH
T ss_conf 035856678751599879969999828999989999999999987---------------69977999972799999999
Q ss_pred HHHHHHHHCCCCC-CCCCCCHHHH--HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
Q ss_conf 9999874101100-0121376889--989999999862780782589988999999886402244474677671353256
Q gi|254780332|r 281 IISEQTEVPSSKI-RRGELTRPDY--EKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 281 ~is~~s~I~~~~i-~~g~l~~~e~--~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~ 357 (504)
T Consensus 71 ~~~~--G~d~~~~~~~g~l~iid~~~~~~~~~~---~~~~~~~~~-~-~~~~~~~~~l~~~i~~~~~~rvVIDSit~l~~ 143 (250)
T PRK04328 71 MAQF--GWDVRKYEEEGKFAIVDAFTGGIGEAA---EREKYVVKD-P-DDVRELIDVLRQAIRDIGAKRVVIDSVSTLYL 143 (250)
T ss_pred HHHC--CCCHHHHHHCCCEEEEECCCCCCCCCC---HHHHHCCCC-C-CCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 9980--998689865697799851233334200---000101368-5-35999999999999851898899937078774
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCCCCCC
Q ss_conf 64432113788999999999999882791999771382201689999840101432422331387889725566164423
Q gi|254780332|r 358 SKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYIRNKE 437 (504)
Q Consensus 358 ~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~ 437 (504)
T Consensus 144 ~~~~--~~r----~~l~~l~~~l~~~g~Ttll~~e~~~~~~------~-----~~~~~ve~~~DgvI~L~~~~~~~~~-- 204 (250)
T PRK04328 144 TKPA--VAR----SIVMQLKRVLAGLGCTSIFVSQVSVGER------G-----FGGPGVEHAVDGIIRLDLDEIDGEL-- 204 (250)
T ss_pred CCHH--HHH----HHHHHHHHHHHHCCCEEEEEECCCCCCC------C-----CCCCCEEEEEEEEEEEEEECCCCEE--
T ss_conf 5858--899----9999999999868986999971003656------6-----6778658999899998887139979--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf 3332221110000001123388389999740899725999997
Q gi|254780332|r 438 PTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAF 480 (504)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f 480 (504)
T Consensus 205 ----------------------~R~l~I~KmRgs~h~~~~~~f 225 (250)
T PRK04328 205 ----------------------KRSLIVWKMRGTKHSMRRHPF 225 (250)
T ss_pred ----------------------EEEEEEEECCCCCCCCCEEEE
T ss_conf ----------------------999999988699658956999