HHsearch alignment for GI: 254780332 and conserved domain: PRK06871
>PRK06871 DNA polymerase III subunit delta'; Validated.
Probab=94.21 E-value=0.38 Score=28.20 Aligned_cols=142 Identities=9% Similarity=0.113 Sum_probs=62.2
Q ss_pred HHHHHHHHHCCC---CEEEEECCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCC--CCCCCC-CE-EEEEECCCC----H
Q ss_conf 377655641677---2677621310027699999999998510111--233333--212479-75-899958521----7
Q gi|254780332|r 208 TLDKQMGGLQRS---DLIIIAGRPGMGKTSLATNIAYNVADAYKAE--LQTDGS--YKTING-GI-VGFYSLEMS----S 274 (504)
Q Consensus 208 ~LD~~~gGl~~G---~l~Viaarpg~GKTalalniA~~~A~~~~~~--~~~~~~--~~~~~g-~~-Vl~fSlEMs----~ 274 (504)
T Consensus 9 ~~~~l~~~~~~~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~v 88 (324)
T PRK06871 9 IYQQITQTFLQGRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDEQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGV 88 (324)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCH
T ss_conf 99999999986995437876899997899999999999828999999988889899999738999879984678887889
Q ss_pred HHHHHHHHHHHHHHC---CCCC---CCC-CCCHHHHHHHHHHHHHHHHCC---E--EEECCCCCCHHHHHHHHHHHCCCC
Q ss_conf 999878999987410---1100---012-137688998999999986278---0--782589988999999886402244
Q gi|254780332|r 275 EQLATRIISEQTEVP---SSKI---RRG-ELTRPDYEKIVACSQVMQKLP---L--YIDQTGGISMSQLATRARRLKRQR 342 (504)
Q Consensus 275 ~el~~R~is~~s~I~---~~~i---~~g-~l~~~e~~~i~~a~~~l~~~~---l--~I~d~~~~ti~~I~~~~r~~~~~~ 342 (504)
T Consensus 89 d~I-R~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNAL---LKtLEEPp~~~~fiL~t~~~~~ll~TI~SRCq~~~~~~ 164 (324)
T PRK06871 89 DQV-REINEKVSQFAQQGGNKVVYIQGAERLTEAAANAL---LKTLEEPRPNTYFLLQADLSASLLATIYSRCQTWLIHV 164 (324)
T ss_pred HHH-HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHH---HHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCEECCC
T ss_conf 999-99999986462205966999758888579999999---99833898783899987870103240862661200899
Q ss_pred CCCEEEECCHH
Q ss_conf 47467767135
Q gi|254780332|r 343 GLDLLIVDYIQ 353 (504)
Q Consensus 343 gi~~vvIDYLq 353 (504)
T Consensus 165 p~~~~~~~wL~ 175 (324)
T PRK06871 165 PEEQIALDWLQ 175 (324)
T ss_pred CCHHHHHHHHH
T ss_conf 49999999999