HHsearch alignment for GI: 254780332 and conserved domain: PRK08006
>PRK08006 replicative DNA helicase; Provisional.
Probab=100.00 E-value=0 Score=919.09 Aligned_cols=449 Identities=38% Similarity=0.636 Sum_probs=415.7
Q ss_pred CCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCH
Q ss_conf 54301026789978999999999832978999999442966637988899999999999839986864388897317983
Q gi|254780332|r 14 KEDSSQYRESPNNIEAEQALLGAILVNNEAFYRVSDFLKPLHFFEAIHQKIFEIMGKLVHMGKTANPVTVKTFLSDQDML 93 (504)
Q Consensus 14 ~~~~~~~~~~P~n~eaE~aVLG~lL~~p~~~~~v~~~L~pedFy~~~hr~IF~ai~~L~~~g~~iD~itl~~~L~~~~~l 93 (504)
T Consensus 18 ~~~~~~~~~pP~s~EAEqaVLGaiLld~d~~~~v~~~L~~edFY~~~H~~IF~ai~~L~~~g~piD~vtv~~~L~~~g~l 97 (471)
T PRK08006 18 DPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQL 97 (471)
T ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH
T ss_conf 80255278999988999999999992864899999636987679988999999999999779987899999999756971
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CC
Q ss_conf 23594899999996221122236778787899999999987655677512344453156668765544443201134-46
Q gi|254780332|r 94 GELTVPQYLARLASEAVSIINTEDYGRIIYGLALRRTLITIGEEMVNAAYEASLDKSPSIQIEEAERKLFHLAENGR-YD 172 (504)
Q Consensus 94 ~~igg~~yL~~L~~~~~s~~n~~~ya~~Ike~~~~R~li~~~~~i~~~a~~~~~~~~~~~~l~~~e~~l~~i~~~~~-~~ 172 (504)
T Consensus 98 ~~iGG~~yL~~L~~~~ps~an~~~Ya~iVkeks~~R~li~~a~~i~~~~~d~~~-~~~~~~ld~ae~~i~~i~~~~~~~~ 176 (471)
T PRK08006 98 DSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIADAGYDPQG-RTSEDLLDLAESRVFQIAESRANKD 176 (471)
T ss_pred HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 422779999999971998889999999999867899999998899986218778-8899999999999999984246666
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 654301343367789999987411-2366443210137765564167726776213100276999999999985101112
Q gi|254780332|r 173 GGFHTFSDAMTVAIDMAGQAFNRD-GRLAGVSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAEL 251 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Gi~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~ 251 (504)
T Consensus 177 ~g~~~~~~i~~~~~~~ie~~~~~~~~gi~Gi~TGf~~LD~~t~Gl~~G~LiviaaRPsmGKTalalnia~~~a~~----- 251 (471)
T PRK08006 177 EGPKSIDDILDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAML----- 251 (471)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-----
T ss_conf 430109999999999999997267899743668838898641688217389999469987699999999999986-----
Q ss_pred CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCEEEECCCCCCHHH
Q ss_conf 3333321247975899958521799987899998741011000121376889989999999-862780782589988999
Q gi|254780332|r 252 QTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTRPDYEKIVACSQV-MQKLPLYIDQTGGISMSQ 330 (504)
Q Consensus 252 ~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~-l~~~~l~I~d~~~~ti~~ 330 (504)
T Consensus 252 ---------~~~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~l~~~e~~~l~~~~~~~~~~~~l~idd~~~~t~~~ 322 (471)
T PRK08006 252 ---------QDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTE 322 (471)
T ss_pred ---------CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
T ss_conf ---------69957998167999999999999744777554536887999999999999999751885773689998999
Q ss_pred HHHHHHHHCCCC-CCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 999886402244-4746776713532566443211378899999999999988279199977138220168999984010
Q gi|254780332|r 331 LATRARRLKRQR-GLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSD 409 (504)
Q Consensus 331 I~~~~r~~~~~~-gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsD 409 (504)
T Consensus 323 i~a~~r~~~~~~~gl~lvvIDYLqL~~~~~~-~~~r~~ei~~isr~lK~lAkel~ipVi~LsQLnR~~e~R~dkrP~lsD 401 (471)
T PRK08006 323 VRSRARRIFREHGGLSLIMIDYLQLMRVPSL-SDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSD 401 (471)
T ss_pred HHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 9999999998648986899638866167874-410668999999999999999699689970168310016999987340
Q ss_pred CCCCCHHHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEE
Q ss_conf 14324223313878897255661644233332221110000001123388389999740899725999997468540200
Q gi|254780332|r 410 LRESGSIEQDADVVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAEFTRFSA 489 (504)
Q Consensus 410 Lr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~~~~f~~ 489 (504)
T Consensus 402 LReSG~IEqdAD~V~~l~R~~~y~~~~~-------------------~~~~~elivaKnR~G~~G~v~l~f~~~~~rF~~ 462 (471)
T PRK08006 402 LRESGSIEQDADLIMFIYRDEVYHENSD-------------------LKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDN 462 (471)
T ss_pred CCCCCCHHHHCCEEEEECCCCCCCCCCC-------------------CCCCEEEEEECCCCCCCEEEEEEEECCCCCCCC
T ss_conf 2243401542868999755033578888-------------------788169999736889860699998468775403
Q ss_pred CCCCCCCC
Q ss_conf 77446677
Q gi|254780332|r 490 LSDSSYQT 497 (504)
Q Consensus 490 ~~~~~~~~ 497 (504)
T Consensus 463 ~~~~~~~~ 470 (471)
T PRK08006 463 YAGPQYDD 470 (471)
T ss_pred CCCCCCCC
T ss_conf 68998889