HHsearch alignment for GI: 254780332 and conserved domain: PRK08927
>PRK08927 fliI flagellum-specific ATP synthase; Validated.
Probab=94.01 E-value=0.078 Score=33.45 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 4321013776556416772677621310027699999999998
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVA 244 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A 244 (504)
T Consensus 142 L~TGIraID~l~p-igrGQRigIfagsGvGKs~Ll~~i~r~~~ 183 (441)
T PRK08927 142 LDLGVRALNTFLT-CCRGQRLGIFAGSGVGKSVLLSMLARNTD 183 (441)
T ss_pred CCCCHHHHHHHHH-HCCCCEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 1036015653300-20364666316899987899999986416