HHsearch alignment for GI: 254780332 and conserved domain: PRK08939
>PRK08939 primosomal protein DnaI; Reviewed.
Probab=96.66 E-value=0.038 Score=35.80 Aligned_cols=131 Identities=19% Similarity=0.313 Sum_probs=70.7
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 64167726776213100276999999999985101112333332124797589995852179998789999874101100
Q gi|254780332|r 214 GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKI 293 (504)
Q Consensus 214 gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i 293 (504)
T Consensus 154 ~~~~kG-ly-l~G~~G~GKTyL~~aian~La~---------------~g~~v~~v~~----p~~~~~lK~s~~------- 205 (306)
T PRK08939 154 GEKVKG-LY-LYGDFGVGKTYLLAAIANELAK---------------KGVSSTLVHF----PEFIRELKNAIS------- 205 (306)
T ss_pred CCCCCE-EE-EECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEH----HHHHHHHHHHHC-------
T ss_conf 988877-88-9899999899999999999998---------------6992999875----999999999864-------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCE-EEECCC-----CCCHHHHHHHHHHHCCCCCCCEEE---ECCHHH---CCCCCCC
Q ss_conf 0121376889989999999862780-782589-----988999999886402244474677---671353---2566443
Q gi|254780332|r 294 RRGELTRPDYEKIVACSQVMQKLPL-YIDQTG-----GISMSQLATRARRLKRQRGLDLLI---VDYIQL---MTTSKKI 361 (504)
Q Consensus 294 ~~g~l~~~e~~~i~~a~~~l~~~~l-~I~d~~-----~~ti~~I~~~~r~~~~~~gi~~vv---IDYLql---i~~~~~~ 361 (504)
T Consensus 206 -d~--------s~~~~i~~~k~~~vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~~l~~~~~~ 276 (306)
T PRK08939 206 -DG--------SVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLAYTQRG 276 (306)
T ss_pred -CC--------CHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCC
T ss_conf -89--------889999998449989984446542677789989999999999749997997799999999998632699
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2113788999999999999882
Q gi|254780332|r 362 EENRVLEITGITMALKALAKEL 383 (504)
Q Consensus 362 ~~~r~~~i~~is~~lK~lA~e~ 383 (504)
T Consensus 277 -~-e~~ka~RimeRI~~l~~~v 296 (306)
T PRK08939 277 -D-ETVKAARIMERIRYLAKEV 296 (306)
T ss_pred -C-CHHHHHHHHHHHHHHCEEE
T ss_conf -5-3799999999999857358