HHsearch alignment for GI: 254780332 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=96.88 E-value=0.0015 Score=46.44 Aligned_cols=40 Identities=33% Similarity=0.582 Sum_probs=34.3
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 1677267762131002769999999999851011123333321247975899958
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL 270 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl 270 (504)
T Consensus 98 i~~~~Nvil~G~~GtGKThLA~Alg~~A~~---------------~G~~v~f~~~ 137 (258)
T PRK09183 98 IERNENIVLLGPSGVGKTHLAIALGYEAVR---------------AGIKVRFTTA 137 (258)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEEH
T ss_conf 655886799899998689999999999998---------------7993999789