HHsearch alignment for GI: 254780332 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=99.66 E-value=4.3e-14 Score=126.75 Aligned_cols=201 Identities=21% Similarity=0.219 Sum_probs=131.7
Q ss_pred CCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 4432101377655-641677267762131002769999999999851011123333321247975899958521799987
Q gi|254780332|r 201 GVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLAT 279 (504)
Q Consensus 201 Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~ 279 (504)
T Consensus 5 Ri~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~--------------~GE~~lyitl~E~~~~l~~ 70 (501)
T PRK09302 5 KLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKS--------------FGEPGVFVTFEESPEDIIR 70 (501)
T ss_pred CCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH--------------CCCCEEEEECCCCHHHHHH
T ss_conf 21448711577854898899779998389999999999999999885--------------5997899985799999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEC----------CCCCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 8999987410110001213768899899999998627807825----------899889999998864022444746776
Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQ----------TGGISMSQLATRARRLKRQRGLDLLIV 349 (504)
Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d----------~~~~ti~~I~~~~r~~~~~~gi~~vvI 349 (504)
T Consensus 71 ~~~~--~g~~~~~~~-------------------~~~~l~i~d~~~~~~~~~~~~~~dL~~l~~~I~~~v~~~~~~RvVi 129 (501)
T PRK09302 71 NVAS--FGWDLQKLI-------------------DEGKLFILDASPDPSEQEEAGEYDLSALIERIEYAIRKIKAKRVVI 129 (501)
T ss_pred HHHH--CCCCHHHHH-------------------HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 9998--499868973-------------------2683899961567431113344768999999999999719999999
Q ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECH
Q ss_conf 71353256644321137889999999999998827919997713822016899998401014324223313878897255
Q gi|254780332|r 350 DYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRD 429 (504)
Q Consensus 350 DYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~ 429 (504)
T Consensus 130 DSlt~l~~~~~~~~----~~R~~l~~L~~~l~~~g~T~llt~E~~~~--~--------~~~~~~g~Ee~vaDGVI~L~~~ 195 (501)
T PRK09302 130 DSIEALFQQYDNPA----VVRRELFRLFAWLKQKGVTAVMTGERGDE--Y--------GPIARYGVEEFVSDCVVILRNV 195 (501)
T ss_pred CCHHHHHHHCCCHH----HHHHHHHHHHHHHHHCCCEEEEEECCCCC--C--------CCCCCCCHHHHHCCEEEEEEEE
T ss_conf 99789987635878----99999999999998779779998756666--7--------8754345244201307887654
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE
Q ss_conf 661644233332221110000001123388389999740899725
Q gi|254780332|r 430 EYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG 474 (504)
Q Consensus 430 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g 474 (504)
T Consensus 196 ~~~~------------------------~~~R~L~V~KmRGs~~~ 216 (501)
T PRK09302 196 LEGE------------------------KRTRTLEILKYRGTTHG 216 (501)
T ss_pred CCCC------------------------CCEEEEEEEECCCCCCC
T ss_conf 1488------------------------52589999983588666