HHsearch alignment for GI: 254780332 and conserved domain: PRK09361
>PRK09361 radB DNA repair and recombination protein RadB; Provisional.
Probab=99.83 E-value=2.1e-18 Score=159.61 Aligned_cols=204 Identities=22% Similarity=0.349 Sum_probs=137.7
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECC-CCHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585-21799987
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLE-MSSEQLAT 279 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlE-Ms~~el~~ 279 (504)
T Consensus 5 isTG~~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~---------------~g~~vlYidtE~~~~e---- 65 (224)
T PRK09361 5 LPTGCKSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAAR---------------QGKKVIYIDTEGLSPE---- 65 (224)
T ss_pred ECCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEECCCCCCHH----
T ss_conf 037978999862699888879999899998599999999999997---------------4990999678767889----
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH---HHHHCCCCCCCEEEECCHHHCC
Q ss_conf 8999987410110001213768899899999998627807825899889999998---8640224447467767135325
Q gi|254780332|r 280 RIISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATR---ARRLKRQRGLDLLIVDYIQLMT 356 (504)
Q Consensus 280 R~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~---~r~~~~~~gi~~vvIDYLqli~ 356 (504)
T Consensus 66 r~~qi-~~~~~--------------------~~~~-~~i~~~~~~--~~~~~~~~i~~~~~~~-~~~~~lvVIDSi~~~~ 120 (224)
T PRK09361 66 RFKQI-AGEDF--------------------EELL-SNIIIFEPS--SFEEQREAIQKAEKIA-KENVGLIVLDSATSLY 120 (224)
T ss_pred HHHHH-HCCCH--------------------HHHH-HCCEEECCC--CHHHHHHHHHHHHHHH-HCCCCEEEEECCHHHE
T ss_conf 99998-56573--------------------4542-061472479--8899999999999875-0587389996230100
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECHHHCC
Q ss_conf ---66443211378899999999999988279199977138220168999984010143242233138788972556616
Q gi|254780332|r 357 ---TSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIRDEYYI 433 (504)
Q Consensus 357 ---~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~ 433 (504)
T Consensus 121 ~~e~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vvl~nqV~~~~~~-~~~~p-----aGg~~l~h~~d~~l~le~~~--- 191 (224)
T PRK09361 121 RLELDDNDNSKLNRELGKQISHLLSLARKHNIAVVITNQVYSDIDS-DGLRP-----LGGHTLEHWSKAILRLEKLR--- 191 (224)
T ss_pred EHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC-CCCCC-----CCCCCEEEEEEEEEEEEECC---
T ss_conf 0001457658999999999999999999719869999668852676-54444-----65412221057999996258---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 44233332221110000001123388389999740899725999997468
Q gi|254780332|r 434 RNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVTLAFQAE 483 (504)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~~~f~~~ 483 (504)
T Consensus 192 ------------------------~~~R~l~v~Knr~~p~~~~~~-f~it 216 (224)
T PRK09361 192 ------------------------NGKRRATLEKHRSRPEGESAE-FRIT 216 (224)
T ss_pred ------------------------CCEEEEEEEECCCCCCCCEEE-EEEC
T ss_conf ------------------------977999997589899996799-9986