HHsearch alignment for GI: 254780332 and conserved domain: PRK09473
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional.
Probab=96.94 E-value=0.014 Score=39.10 Aligned_cols=180 Identities=20% Similarity=0.245 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE---CCCCHHHHHHH--
Q ss_conf 0137765564167726776213100276999999999985101112333332124797589995---85217999878--
Q gi|254780332|r 206 IQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYS---LEMSSEQLATR-- 280 (504)
Q Consensus 206 ~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fS---lEMs~~el~~R-- 280 (504)
T Consensus 29 v~av~~Vsf~i~~GEilgivGeSGsGKSTl~~~i~gll~~~~-----------~~-sG~I~~~G~~i~~~~~~~~~~~r~ 96 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG-----------RI-GGSATFNGREILNLPEKELNKLRA 96 (330)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC-----------CE-EEEEEECCEECCCCCHHHHHHHHC
T ss_conf 898667476888998999986898779999999976888888-----------33-589999999866589999998630
Q ss_pred -HHHHHHHHC------CCCCC---------CCCCCHHHHHHHHHHHHHHHHCCE-----EEECCC-CCCHHHH--HHHHH
Q ss_conf -999987410------11000---------121376889989999999862780-----782589-9889999--99886
Q gi|254780332|r 281 -IISEQTEVP------SSKIR---------RGELTRPDYEKIVACSQVMQKLPL-----YIDQTG-GISMSQL--ATRAR 336 (504)
Q Consensus 281 -~is~~s~I~------~~~i~---------~g~l~~~e~~~i~~a~~~l~~~~l-----~I~d~~-~~ti~~I--~~~~r 336 (504)
T Consensus 97 ~~I~~vfQdp~~sLnP~~~i~~~l~e~l~~~~~~~~~~--~~~~~~~lL~~v~l~~~~~~l~~yP~eLSGGq~QRV~IAr 174 (330)
T PRK09473 97 EQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAE--AFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAM 174 (330)
T ss_pred CCEEEEEECCCHHCCCCCCHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHCCHHHHHHHCCHHHCCHHHHHHHHHHH
T ss_conf 66799960750113841045665557898853899899--9999998888760721788873481533988999999999
Q ss_pred HHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 40224447467767135325664432113788999999999999882791999771382201689999840101432422
Q gi|254780332|r 337 RLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSI 416 (504)
Q Consensus 337 ~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~I 416 (504)
T Consensus 175 AL~--~~P~lLI~D-----EPTsa-LDv--~~q~~Il~ll~~l~~e~g~til~ITH----------------D---l~~v 225 (330)
T PRK09473 175 ALL--CRPKLLIAD-----EPTTA-LDV--TVQAQIMTLLNELKREFNTAIIMITH----------------D---LGVV 225 (330)
T ss_pred HHH--CCCCEEEEC-----CCCCC-CCH--HHHHHHHHHHHHHHHHCCCCEEEECC----------------C---HHHH
T ss_conf 997--099999973-----87554-799--99999999999999974994799828----------------8---9999
Q ss_pred HHHCCEEEEEEC
Q ss_conf 331387889725
Q gi|254780332|r 417 EQDADVVLFVIR 428 (504)
Q Consensus 417 EqdAD~v~~l~R 428 (504)
T Consensus 226 ~~~~DrI~VMy~ 237 (330)
T PRK09473 226 AGICDKVLVMYA 237 (330)
T ss_pred HHHCCEEEEEEC
T ss_conf 986998999989