HHsearch alignment for GI: 254780332 and conserved domain: PRK10762
>PRK10762 D-ribose transporter ATP binding protein; Provisional.
Probab=96.84 E-value=0.022 Score=37.61 Aligned_cols=172 Identities=16% Similarity=0.204 Sum_probs=81.0
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC------CCCEEEEEEC---------CCCHHHHHHH
Q ss_conf 167726776213100276999999999985101112333332124------7975899958---------5217999878
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTI------NGGIVGFYSL---------EMSSEQLATR 280 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~------~g~~Vl~fSl---------EMs~~el~~R 280 (504)
T Consensus 275 v~~GEi~gi~G~nGsGKsTL~~~l~Gl~-~~~~G~v~~~G~~i~~~~~~~~~~~~i~~v~~dr~~~~l~~~~sv~en~~~ 353 (501)
T PRK10762 275 LRKGEILGVSGLMGAGRTELMKVLYGAL-PRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353 (501)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEEEECCEECCCCCHHHHHHCCCCEECHHHHHCCCCCCCCHHHHHHH
T ss_conf 6688189966788876889999981876-777776999999888779899986178445123331476678809998878
Q ss_pred HHHHHHHHCCCCCCC--CCCCHH-HHHHHHHHHHHHHHCCE---EEECCC-CCCHHHHH--HHHHHHCCCCCCCEEEECC
Q ss_conf 999987410110001--213768-89989999999862780---782589-98899999--9886402244474677671
Q gi|254780332|r 281 IISEQTEVPSSKIRR--GELTRP-DYEKIVACSQVMQKLPL---YIDQTG-GISMSQLA--TRARRLKRQRGLDLLIVDY 351 (504)
Q Consensus 281 ~is~~s~I~~~~i~~--g~l~~~-e~~~i~~a~~~l~~~~l---~I~d~~-~~ti~~I~--~~~r~~~~~~gi~~vvIDY 351 (504)
T Consensus 354 --~~-----~~~~~~~~~~~~~~~~~~~~~~~---l~~~~l~~~~~~~~~~~LSGGq~Qrv~iAraL~--~~p~lLilD- 420 (501)
T PRK10762 354 --TA-----LDYFSRAGGSLKHADEQQAVSDF---IRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM--TRPKVLILD- 420 (501)
T ss_pred --HH-----HHHHHHHCCCCCHHHHHHHHHHH---HHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEE-
T ss_conf --87-----88653301325789999999999---975288630011770209999999999999997--299889997-
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 35325664432113788999999999999882791999771382201689999840101432422331387889725
Q gi|254780332|r 352 IQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 352 Lqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 421 ----EPT~-GLD--~~~~~~i~~ll~~l~~~-G~til~isH----------------D---l~~v~~~aDRv~vm~~ 470 (501)
T PRK10762 421 ----EPTR-GVD--VGAKKEIYQLINQFKAD-GLSIILVSS----------------E---MPEVLGMSDRIIVMHE 470 (501)
T ss_pred ----CCCC-CCC--HHHHHHHHHHHHHHHHC-CCEEEEEEC----------------C---HHHHHHHCCEEEEEEC
T ss_conf ----9866-899--99999999999999967-999999918----------------6---8999986999999969