HHsearch alignment for GI: 254780332 and conserved domain: PRK10867
>PRK10867 signal recognition particle protein; Provisional.
Probab=96.88 E-value=0.053 Score=34.70 Aligned_cols=145 Identities=15% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCH--HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 772677621310027699999999998510111233333212479758999585217--999878999987410110001
Q gi|254780332|r 218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSS--EQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~--~el~~R~is~~s~I~~~~i~~ 295 (504)
T Consensus 99 ~p~VIm~vGLqGsGKTTT~aKLA~~lk~--------------k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~ 164 (453)
T PRK10867 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE--------------KHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV 164 (453)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCC
T ss_conf 9969999746888518589999999997--------------38983798558877058999999999851980436788
Q ss_pred CCCCHHHHHHHHHHHHHH--HHCCEEEECCCCC-CHH-HHHHHHHHHCCCCCCC--EEEECCHHHCCCCCCCCCHHHHHH
Q ss_conf 213768899899999998--6278078258998-899-9999886402244474--677671353256644321137889
Q gi|254780332|r 296 GELTRPDYEKIVACSQVM--QKLPLYIDQTGGI-SMS-QLATRARRLKRQRGLD--LLIVDYIQLMTTSKKIEENRVLEI 369 (504)
Q Consensus 296 g~l~~~e~~~i~~a~~~l--~~~~l~I~d~~~~-ti~-~I~~~~r~~~~~~gi~--~vvIDYLqli~~~~~~~~~r~~~i 369 (504)
T Consensus 165 ~~-dp~--~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~--------~G----Q~a 229 (453)
T PRK10867 165 GQ-KPV--DIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAM--------TG----QDA 229 (453)
T ss_pred CC-CHH--HHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECC--------CC----HHH
T ss_conf 99-889--9999999999977999999978760121088899999998763787137974322--------35----668
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9999999999988279199977138
Q gi|254780332|r 370 TGITMALKALAKELNIPIIALSQLS 394 (504)
Q Consensus 370 ~~is~~lK~lA~e~~ipvi~lsQLn 394 (504)
T Consensus 230 ~---~~a~~F~~~~~~~gvIlTKlD 251 (453)
T PRK10867 230 A---NTAKAFNEALPLTGVVLTKVD 251 (453)
T ss_pred H---HHHHHHHHHCCCCEEEEECCC
T ss_conf 9---999999985598707875046