HHsearch alignment for GI: 254780332 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.35 E-value=0.0071 Score=41.36 Aligned_cols=86 Identities=17% Similarity=0.314 Sum_probs=56.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 26776213100276999999999985101112333332124797589995852179998789999874101100012137
Q gi|254780332|r 220 DLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELT 299 (504)
Q Consensus 220 ~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~ 299 (504)
T Consensus 242 q~IALVGPTGVGKTTTIAKLAArf~---------------~~~KkVALITtD------TYRIGA---------------- 284 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH---------------GKKKTVGFITTD------HSRIGT---------------- 284 (436)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---------------CCCCEEEEEECC------CCHHHH----------------
T ss_conf 1799989999888999999999986---------------169808999806------634769----------------
Q ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 688998999999986278078258998899999988640224447467767
Q gi|254780332|r 300 RPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 300 ~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvID 350 (504)
T Consensus 285 ---VEQLKTYA-eIMgVPV~VV~----dp~eL~~AL~~lkdka~~DLILID 327 (436)
T PRK11889 285 ---VQQLQDYV-KTIGFEVIAVR----DEAAMTRALTYFKEEARVDYILID 327 (436)
T ss_pred ---HHHHHHHH-HHHCCCEEEEC----CHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf ---99999999-98499439968----889999999987633688889992