HHsearch alignment for GI: 254780332 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.42  E-value=0.0073  Score=41.28  Aligned_cols=117  Identities=19%  Similarity=0.323  Sum_probs=68.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             77267762131002769999999999851011123333321247975899958521799987899998741011000121
Q gi|254780332|r  218 RSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGE  297 (504)
Q Consensus       218 ~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~  297 (504)
T Consensus       222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l--------------~~~kkVaLIT~D------TYRIgA--------------  267 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFL--------------HMGKSVSLYTTD------NYRIAA--------------  267 (432)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH--------------HCCCEEEEEECC------CCCHHH--------------
T ss_conf             7629999899998889999999999999--------------749927999526------653779--------------


Q ss_pred             CCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             37688998999999986278078258998899999988640224447467767135325664432113788999999999
Q gi|254780332|r  298 LTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALK  377 (504)
Q Consensus       298 l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK  377 (504)
T Consensus       268 -----vEQLktYa-~Il~iPv~vv~----~~~el~~al---~~-~~~DlILID------TAGrS~rd~-~~~----~eL~  322 (432)
T PRK12724        268 -----IEQLKRYA-DTMGMPFYPVK----DIKKFKETL---AR-DGSELILID------TAGYSHRNL-EQL----ERMQ  322 (432)
T ss_pred             -----HHHHHHHH-HHHCCCEEEEE----CHHHHHHHH---HH-CCCCEEEEE------CCCCCCCCH-HHH----HHHH
T ss_conf             -----99999999-98599459951----899999999---85-699999992------999897899-999----9999


Q ss_pred             HHHHH----HCC-CEEEEEEC
Q ss_conf             99988----279-19997713
Q gi|254780332|r  378 ALAKE----LNI-PIIALSQL  393 (504)
Q Consensus       378 ~lA~e----~~i-pvi~lsQL  393 (504)
T Consensus       323 ~ll~~~~~~~~ie~~LVLSaT  343 (432)
T PRK12724        323 SFYSCFGEKDSVENLLVLSST  343 (432)
T ss_pred             HHHHHHCCCCCCEEEEEEECC
T ss_conf             999863667885179999788