HHsearch alignment for GI: 254780332 and conserved domain: PRK12726

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.23  E-value=0.027  Score=36.96  Aligned_cols=93  Identities=18%  Similarity=0.365  Sum_probs=56.9

Q ss_pred             HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             16772677621310027699999999998510111233333212479758999585217999878999987410110001
Q gi|254780332|r  216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRR  295 (504)
Q Consensus       216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~  295 (504)
T Consensus       203 l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~---------------~gkkV~LVAaD------TFRaAA------------  249 (407)
T PRK12726        203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLK---------------QNRTVGFITTD------TFRSGA------------  249 (407)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECC------CCCHHH------------
T ss_conf             036908999899989789999999999997---------------79917999706------677889------------


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHH
Q ss_conf             2137688998999999986278078258998899999988640224447467767135
Q gi|254780332|r  296 GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQ  353 (504)
Q Consensus       296 g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLq  353 (504)
T Consensus       250 -------iEQLk~~g~rl-gVpV~~~~----dpa~l~~av~~~a~~~~~DvVIIDTAG  295 (407)
T PRK12726        250 -------VEQFQGYADKL-DVELIVAT----SPAELEEAVQYMTYVNCVDHILIDTVG  295 (407)
T ss_pred             -------HHHHHHHHHHH-CCEEEEEC----CHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             -------99999999997-96499818----889999999999862899989996999