HHsearch alignment for GI: 254780332 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.23 E-value=0.027 Score=36.96 Aligned_cols=93 Identities=18% Similarity=0.365 Sum_probs=56.9
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 16772677621310027699999999998510111233333212479758999585217999878999987410110001
Q gi|254780332|r 216 LQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRR 295 (504)
Q Consensus 216 l~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~ 295 (504)
T Consensus 203 l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~---------------~gkkV~LVAaD------TFRaAA------------ 249 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLK---------------QNRTVGFITTD------TFRSGA------------ 249 (407)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHHHH---------------CCCCEEEEECC------CCCHHH------------
T ss_conf 036908999899989789999999999997---------------79917999706------677889------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHH
Q ss_conf 2137688998999999986278078258998899999988640224447467767135
Q gi|254780332|r 296 GELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIVDYIQ 353 (504)
Q Consensus 296 g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvIDYLq 353 (504)
T Consensus 250 -------iEQLk~~g~rl-gVpV~~~~----dpa~l~~av~~~a~~~~~DvVIIDTAG 295 (407)
T PRK12726 250 -------VEQFQGYADKL-DVELIVAT----SPAELEEAVQYMTYVNCVDHILIDTVG 295 (407)
T ss_pred -------HHHHHHHHHHH-CCEEEEEC----CHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf -------99999999997-96499818----889999999999862899989996999