HHsearch alignment for GI: 254780332 and conserved domain: PRK13889
>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=96.46 E-value=0.099 Score=32.62 Aligned_cols=141 Identities=16% Similarity=0.208 Sum_probs=86.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 67726776213100276999999999985101112333332124797589995852179998789999874101100012
Q gi|254780332|r 217 QRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRG 296 (504)
Q Consensus 217 ~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g 296 (504)
T Consensus 360 ~~~~iavVvG~AGtGKStm-L~aAReawE--------------a~GyrV~GaAL----sGkAAegLe~~sGI~SrTlAs~ 420 (992)
T PRK13889 360 DGRDLGVVVGYAGTGKSAM-LGVAREAWE--------------AAGYEVRGAAL----SGIAAENLEGGSGIASRTIASL 420 (992)
T ss_pred CCCCEEEEEECCCCCHHHH-HHHHHHHHH--------------HCCCEEEEECC----CHHHHHHHHHCCCCCCHHHHHH
T ss_conf 7897589983388878899-999999999--------------77988981150----0689997653479431679999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE-CCHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 13768899899999998627807825899889999998864022444746776-71353256644321137889999999
Q gi|254780332|r 297 ELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLKRQRGLDLLIV-DYIQLMTTSKKIEENRVLEITGITMA 375 (504)
Q Consensus 297 ~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~vvI-DYLqli~~~~~~~~~r~~~i~~is~~ 375 (504)
T Consensus 421 ---e~~w---~~g~~~L~~~dVlVVDEAGMVgSRqMarll~~Ae~AGAKVVLVGD~~QLq~IeA-G--a----------a 481 (992)
T PRK13889 421 ---EHGW---GQGRDLLTARDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEA-G--A----------A 481 (992)
T ss_pred ---HHHH---HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCC-C--H----------H
T ss_conf ---9987---467334789858999676557749999999999984998999488777188646-8--8----------9
Q ss_pred HHHHHHHHCCCEEEEEECCCCC
Q ss_conf 9999988279199977138220
Q gi|254780332|r 376 LKALAKELNIPIIALSQLSRQV 397 (504)
Q Consensus 376 lK~lA~e~~ipvi~lsQLnR~~ 397 (504)
T Consensus 482 Fral~er~G~--aeLteIrRQr 501 (992)
T PRK13889 482 FRSIHERHGG--AEIGEVRRQR 501 (992)
T ss_pred HHHHHHHCCC--EEEEHEECCC
T ss_conf 9999985196--7510222148