HHsearch alignment for GI: 254780332 and conserved domain: TIGR02238
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1; InterPro: IPR011940 This entry describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (IPR011938 from INTERPRO) and RadB (IPR011939 from INTERPRO) and bacterial RecA. It has been characterised for human as a recombinase active only in meiosis .; GO: 0003677 DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0007131 meiotic recombination, 0005634 nucleus.
Probab=97.46 E-value=0.003 Score=44.24 Aligned_cols=219 Identities=20% Similarity=0.271 Sum_probs=128.0
Q ss_pred CCCCCCCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 23664432101377655-64167726776213100276999999999985101112333332124797589995852179
Q gi|254780332|r 197 GRLAGVSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSE 275 (504)
Q Consensus 197 ~~~~Gi~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~ 275 (504)
T Consensus 73 ~~V~~i~TGs~~~d~~LGGGi~s~~ITE~fGEfR~GKTQl~HTL~VtaQ----LP-----~~~~g~~GKv~yIDTEgTFR 143 (314)
T TIGR02238 73 KKVLKISTGSKALDKILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQ----LP-----REMGGGEGKVAYIDTEGTFR 143 (314)
T ss_pred CEEEEEECCHHHHHHHCCCCEEEEEHEECCCCCCCCHHHHHHHHHHHHH----CC-----CCCCCCCCEEEEEECCCCCC
T ss_conf 2467762315887434078700000000004556771465556655320----63-----12579984289981788858
Q ss_pred HHHHHHHHHHHHHCCCCCCCC-----CC-CHHHHHHHHHHHHHHHHC---CEEEECCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 998789999874101100012-----13-768899899999998627---807825899889999998864022444746
Q gi|254780332|r 276 QLATRIISEQTEVPSSKIRRG-----EL-TRPDYEKIVACSQVMQKL---PLYIDQTGGISMSQLATRARRLKRQRGLDL 346 (504)
Q Consensus 276 el~~R~is~~s~I~~~~i~~g-----~l-~~~e~~~i~~a~~~l~~~---~l~I~d~~~~ti~~I~~~~r~~~~~~gi~~ 346 (504)
T Consensus 144 Pdri~~IAerf~~D~~~~L~Ni~yaRA~~~Eh~~~l~~~~~~~~~e~~~f~llivD-------SI~------------al 204 (314)
T TIGR02238 144 PDRIKAIAERFGVDGEAVLDNILYARAYTSEHQMELLEKLAAKFAEEGDFRLLIVD-------SIM------------AL 204 (314)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEH-------HHH------------HH
T ss_conf 17899887540789889998889887504278999999998875226871688642-------025------------54
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 77671353256644321137889999999999998827919997713822016-----8999984010143242233138
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVEN-----RDNKRPQLSDLRESGSIEQDAD 421 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~-----r~~krP~lsDLr~Sg~IEqdAD 421 (504)
T Consensus 205 FRVDfsG----RG-ELseRQQKL~~~l~~L~~~sEefNvAv~~TNQv~~DPGa~~~F~~~~~KP~------GGHvlaHAs 273 (314)
T TIGR02238 205 FRVDFSG----RG-ELSERQQKLAQMLSRLNKLSEEFNVAVFVTNQVQADPGATMTFIADPKKPI------GGHVLAHAS 273 (314)
T ss_pred HCCCCCC----CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHCCCCCCCCC------CCHHHHHHH
T ss_conf 1312125----76-402788999999999876546640232001122008873000000788871------502577789
Q ss_pred EEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCE-EEEEEEECC
Q ss_conf 78897255661644233332221110000001123388389999740899725-999997468
Q gi|254780332|r 422 VVLFVIRDEYYIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTG-TVTLAFQAE 483 (504)
Q Consensus 422 ~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g-~~~~~f~~~ 483 (504)
T Consensus 274 ~~R~~l-----------------------------RKGrg~~RvaK~~DsP~~pE~E~~f~i~ 307 (314)
T TIGR02238 274 ATRLLL-----------------------------RKGRGDERVAKLYDSPDLPEAEASFQIT 307 (314)
T ss_pred HHHHHH-----------------------------HCCCCCCCEEEECCCCCCCCCCCEEEEC
T ss_conf 988864-----------------------------1588655167301688772214146764