HHsearch alignment for GI: 254780332 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=95.45 E-value=0.0081 Score=40.91 Aligned_cols=39 Identities=33% Similarity=0.587 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHH-HHHCCCC-EEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 432101377655-6416772-67762131002769999999999
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSD-LIIIAGRPGMGKTSLATNIAYNV 243 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~-l~Viaarpg~GKTalalniA~~~ 243 (504)
T Consensus 137 L~tGvRaiDGlLTcG--~GQRiGIFA~-aG~GKSTLL~~i~~g~ 177 (430)
T TIGR02546 137 LPTGVRAIDGLLTCG--EGQRIGIFAG-AGVGKSTLLGMIARGA 177 (430)
T ss_pred CHHHHHHHHHHHHCC--CCCEEEEEEC-CCCCHHHHHHHHHCCC
T ss_conf 101466754344036--6530578708-8861668999986189