HHsearch alignment for GI: 254780332 and conserved domain: TIGR03269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.76 E-value=0.012 Score=39.52 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=48.9
Q ss_pred CCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 9889999--99886402244474677671353256644321137889999999999998827919997713822016899
Q gi|254780332|r 325 GISMSQL--ATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN 402 (504)
Q Consensus 325 ~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~ 402 (504)
T Consensus 427 ~LSGGq~QRvaiAraL~--~~P~vlilD-----EPT~-glD--~~~~~~i~~~l~~~~~~~g~tvi~iSh---------- 486 (520)
T TIGR03269 427 ELSEGERHRVALAQVLI--KEPRIVILD-----EPTG-TMD--PITKVDVTHSILKAREEMEQTFIIVSH---------- 486 (520)
T ss_pred HCCHHHHHHHHHHHHHH--HCCCEEEEE-----CCHH-HHH--HHHHHHHHHHHHHHHHHCCCEEEEECC----------
T ss_conf 18999999999999999--798989993-----8601-133--899999999999999832989999778----------
Q ss_pred CCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 99840101432422331387889725
Q gi|254780332|r 403 KRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 403 krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 487 ------D---l~~~~~~~dRv~vm~~ 503 (520)
T TIGR03269 487 ------D---MDFVLDVCDRAALMRD 503 (520)
T ss_pred ------C---HHHHHHHCCEEEEEEC
T ss_conf ------8---8999986999999979