HHsearch alignment for GI: 254780332 and conserved domain: TIGR03269

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.76  E-value=0.012  Score=39.52  Aligned_cols=75  Identities=15%  Similarity=0.180  Sum_probs=48.9

Q ss_pred             CCCHHHH--HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf             9889999--99886402244474677671353256644321137889999999999998827919997713822016899
Q gi|254780332|r  325 GISMSQL--ATRARRLKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDN  402 (504)
Q Consensus       325 ~~ti~~I--~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~  402 (504)
T Consensus       427 ~LSGGq~QRvaiAraL~--~~P~vlilD-----EPT~-glD--~~~~~~i~~~l~~~~~~~g~tvi~iSh----------  486 (520)
T TIGR03269       427 ELSEGERHRVALAQVLI--KEPRIVILD-----EPTG-TMD--PITKVDVTHSILKAREEMEQTFIIVSH----------  486 (520)
T ss_pred             HCCHHHHHHHHHHHHHH--HCCCEEEEE-----CCHH-HHH--HHHHHHHHHHHHHHHHHCCCEEEEECC----------
T ss_conf             18999999999999999--798989993-----8601-133--899999999999999832989999778----------


Q ss_pred             CCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf             99840101432422331387889725
Q gi|254780332|r  403 KRPQLSDLRESGSIEQDADVVLFVIR  428 (504)
Q Consensus       403 krP~lsDLr~Sg~IEqdAD~v~~l~R  428 (504)
T Consensus       487 ------D---l~~~~~~~dRv~vm~~  503 (520)
T TIGR03269       487 ------D---MDFVLDVCDRAALMRD  503 (520)
T ss_pred             ------C---HHHHHHHCCEEEEEEC
T ss_conf             ------8---8999986999999979