HHsearch alignment for GI: 254780332 and conserved domain: TIGR03269

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.11  E-value=0.1  Score=32.45  Aligned_cols=143  Identities=16%  Similarity=0.214  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCC--CCCC---CEEEEEEC----
Q ss_conf             137765564167726776213100276999999999985101112333-------3321--2479---75899958----
Q gi|254780332|r  207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTD-------GSYK--TING---GIVGFYSL----  270 (504)
Q Consensus       207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~-------~~~~--~~~g---~~Vl~fSl----  270 (504)
T Consensus       298 ~al~~vs~~v~~GEi~gi~G~nGsGKsTL~k~l~G-l~~p~~G~V~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~l  376 (520)
T TIGR03269       298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG-VLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL  376 (520)
T ss_pred             EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEECCCCC
T ss_conf             46512068972896899987888878999999948-87898747999738744436675866778762551499466545


Q ss_pred             --CCCHHHHHHHHHH--------------HH--HHHCCCCC-----CC-CCCCHHHHHHHHHHHHHHHHCCEEEECCCCC
Q ss_conf             --5217999878999--------------98--74101100-----01-2137688998999999986278078258998
Q gi|254780332|r  271 --EMSSEQLATRIIS--------------EQ--TEVPSSKI-----RR-GELTRPDYEKIVACSQVMQKLPLYIDQTGGI  326 (504)
Q Consensus       271 --EMs~~el~~R~is--------------~~--s~I~~~~i-----~~-g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~  326 (504)
T Consensus       377 ~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~r~p~~LSGGq~QRvaiAraL~~~P~vlilDEPT~  456 (520)
T TIGR03269       377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG  456 (520)
T ss_pred             CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf             76788999999998635766899999999999759976677776547921189999999999999997989899938601


Q ss_pred             CHH-----HHHHHHHHHCCCCCCCEEEEC
Q ss_conf             899-----999988640224447467767
Q gi|254780332|r  327 SMS-----QLATRARRLKRQRGLDLLIVD  350 (504)
Q Consensus       327 ti~-----~I~~~~r~~~~~~gi~~vvID  350 (504)
T Consensus       457 glD~~~~~~i~~~l~~~~~~~g~tvi~iS  485 (520)
T TIGR03269       457 TMDPITKVDVTHSILKAREEMEQTFIIVS  485 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             13389999999999999983298999977