HHsearch alignment for GI: 254780332 and conserved domain: TIGR03269
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.11 E-value=0.1 Score=32.45 Aligned_cols=143 Identities=16% Similarity=0.214 Sum_probs=67.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCC--CCCC---CEEEEEEC----
Q ss_conf 137765564167726776213100276999999999985101112333-------3321--2479---75899958----
Q gi|254780332|r 207 QTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTD-------GSYK--TING---GIVGFYSL---- 270 (504)
Q Consensus 207 ~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~-------~~~~--~~~g---~~Vl~fSl---- 270 (504)
T Consensus 298 ~al~~vs~~v~~GEi~gi~G~nGsGKsTL~k~l~G-l~~p~~G~V~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~l 376 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG-VLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEECCCCC
T ss_conf 46512068972896899987888878999999948-87898747999738744436675866778762551499466545
Q ss_pred --CCCHHHHHHHHHH--------------HH--HHHCCCCC-----CC-CCCCHHHHHHHHHHHHHHHHCCEEEECCCCC
Q ss_conf --5217999878999--------------98--74101100-----01-2137688998999999986278078258998
Q gi|254780332|r 271 --EMSSEQLATRIIS--------------EQ--TEVPSSKI-----RR-GELTRPDYEKIVACSQVMQKLPLYIDQTGGI 326 (504)
Q Consensus 271 --EMs~~el~~R~is--------------~~--s~I~~~~i-----~~-g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ 326 (504)
T Consensus 377 ~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~r~p~~LSGGq~QRvaiAraL~~~P~vlilDEPT~ 456 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456 (520)
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 76788999999998635766899999999999759976677776547921189999999999999997989899938601
Q ss_pred CHH-----HHHHHHHHHCCCCCCCEEEEC
Q ss_conf 899-----999988640224447467767
Q gi|254780332|r 327 SMS-----QLATRARRLKRQRGLDLLIVD 350 (504)
Q Consensus 327 ti~-----~I~~~~r~~~~~~gi~~vvID 350 (504)
T Consensus 457 glD~~~~~~i~~~l~~~~~~~g~tvi~iS 485 (520)
T TIGR03269 457 TMDPITKVDVTHSILKAREEMEQTFIIVS 485 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 13389999999999999983298999977