HHsearch alignment for GI: 254780332 and conserved domain: TIGR03375

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.08  E-value=0.31  Score=28.83  Aligned_cols=171  Identities=19%  Similarity=0.258  Sum_probs=85.9

Q ss_pred             HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHHH
Q ss_conf             77655641677267762131002769999999999851011123333321247975899958---521799987899998
Q gi|254780332|r  209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISEQ  285 (504)
Q Consensus       209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~~  285 (504)
T Consensus       481 l~~vsl~i~~Ge~vaIvG~sGsGKSTL~kll~G-l~~--------------p~~G~i~idg~~~~~~~~~~~-r~~i~~v  544 (694)
T TIGR03375       481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG-LYQ--------------PTEGSVLLDGVDIRQIDPADL-RRNIGYV  544 (694)
T ss_pred             HCCHHHEECCCCEEEEEECCCCCHHHHHHHHCC-CCC--------------CCCCEEEECCEECCCCCHHHH-HHHCEEE
T ss_conf             136311887997899980589878899998556-758--------------998879989854254999999-7302135


Q ss_pred             HHHC-------CCCCC--CCCCCHHHHHHHH---HHHHHHHHCC----EEEECC-CCCCHHHH--HHHHHHHCCCCCCCE
Q ss_conf             7410-------11000--1213768899899---9999986278----078258-99889999--998864022444746
Q gi|254780332|r  286 TEVP-------SSKIR--RGELTRPDYEKIV---ACSQVMQKLP----LYIDQT-GGISMSQL--ATRARRLKRQRGLDL  346 (504)
Q Consensus       286 s~I~-------~~~i~--~g~l~~~e~~~i~---~a~~~l~~~~----l~I~d~-~~~ti~~I--~~~~r~~~~~~gi~~  346 (504)
T Consensus       545 ~Q~~~lf~gTi~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~lp~g~~t~i~e~G~~LSgGqrQri~lARAl~--~~p~i  622 (694)
T TIGR03375       545 PQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL--RDPPI  622 (694)
T ss_pred             CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH--CCCCE
T ss_conf             7677110746999984169999999999999981979999718566787746899946899999999999995--79998


Q ss_pred             EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf             77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r  347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV  426 (504)
Q Consensus       347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l  426 (504)
T Consensus       623 lilD-----E~ts~L-D~~~e--~~i~~~l~~~~~--~~T~i~itH-----------rls---------~i~~aD~i~vl  672 (694)
T TIGR03375       623 LLLD-----EPTSAM-DNRSE--ERFKDRLKRWLA--GKTLVLVTH-----------RTS---------LLDLVDRIIVM  672 (694)
T ss_pred             EEEE-----CCCCCC-CHHHH--HHHHHHHHHHCC--CCEEEEEEC-----------CHH---------HHHHCCEEEEE
T ss_conf             9997-----875688-99999--999999998669--998999816-----------899---------99849999999


Q ss_pred             E
Q ss_conf             2
Q gi|254780332|r  427 I  427 (504)
Q Consensus       427 ~  427 (504)
T Consensus       673 ~  673 (694)
T TIGR03375       673 D  673 (694)
T ss_pred             E
T ss_conf             8