HHsearch alignment for GI: 254780332 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.08 E-value=0.31 Score=28.83 Aligned_cols=171 Identities=19% Similarity=0.258 Sum_probs=85.9
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHHH
Q ss_conf 77655641677267762131002769999999999851011123333321247975899958---521799987899998
Q gi|254780332|r 209 LDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISEQ 285 (504)
Q Consensus 209 LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~~ 285 (504)
T Consensus 481 l~~vsl~i~~Ge~vaIvG~sGsGKSTL~kll~G-l~~--------------p~~G~i~idg~~~~~~~~~~~-r~~i~~v 544 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG-LYQ--------------PTEGSVLLDGVDIRQIDPADL-RRNIGYV 544 (694)
T ss_pred HCCHHHEECCCCEEEEEECCCCCHHHHHHHHCC-CCC--------------CCCCEEEECCEECCCCCHHHH-HHHCEEE
T ss_conf 136311887997899980589878899998556-758--------------998879989854254999999-7302135
Q ss_pred HHHC-------CCCCC--CCCCCHHHHHHHH---HHHHHHHHCC----EEEECC-CCCCHHHH--HHHHHHHCCCCCCCE
Q ss_conf 7410-------11000--1213768899899---9999986278----078258-99889999--998864022444746
Q gi|254780332|r 286 TEVP-------SSKIR--RGELTRPDYEKIV---ACSQVMQKLP----LYIDQT-GGISMSQL--ATRARRLKRQRGLDL 346 (504)
Q Consensus 286 s~I~-------~~~i~--~g~l~~~e~~~i~---~a~~~l~~~~----l~I~d~-~~~ti~~I--~~~~r~~~~~~gi~~ 346 (504)
T Consensus 545 ~Q~~~lf~gTi~eNi~~~~~~~~~~~i~~a~~~a~l~~~I~~lp~g~~t~i~e~G~~LSgGqrQri~lARAl~--~~p~i 622 (694)
T TIGR03375 545 PQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL--RDPPI 622 (694)
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH--CCCCE
T ss_conf 7677110746999984169999999999999981979999718566787746899946899999999999995--79998
Q ss_pred EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEE
Q ss_conf 77671353256644321137889999999999998827919997713822016899998401014324223313878897
Q gi|254780332|r 347 LIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFV 426 (504)
Q Consensus 347 vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 426 (504)
T Consensus 623 lilD-----E~ts~L-D~~~e--~~i~~~l~~~~~--~~T~i~itH-----------rls---------~i~~aD~i~vl 672 (694)
T TIGR03375 623 LLLD-----EPTSAM-DNRSE--ERFKDRLKRWLA--GKTLVLVTH-----------RTS---------LLDLVDRIIVM 672 (694)
T ss_pred EEEE-----CCCCCC-CHHHH--HHHHHHHHHHCC--CCEEEEEEC-----------CHH---------HHHHCCEEEEE
T ss_conf 9997-----875688-99999--999999998669--998999816-----------899---------99849999999
Q ss_pred E
Q ss_conf 2
Q gi|254780332|r 427 I 427 (504)
Q Consensus 427 ~ 427 (504)
T Consensus 673 ~ 673 (694)
T TIGR03375 673 D 673 (694)
T ss_pred E
T ss_conf 8