HHsearch alignment for GI: 254780332 and conserved domain: TIGR03411
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.37 E-value=0.11 Score=32.25 Aligned_cols=177 Identities=20% Similarity=0.190 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHH
Q ss_conf 101377655641677267762131002769999999999851011123333321247975899958---52179998789
Q gi|254780332|r 205 GIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRI 281 (504)
Q Consensus 205 G~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~ 281 (504)
T Consensus 14 ~~~al~~vsl~v~~Gei~~liGpNGaGKSTLl~~i-~Gl~~p--------------~~G~I~~~G~~i~~~~~~~~~~~g 78 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVI-TGKTRP--------------DEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHH-HCCCCC--------------CCEEEEECCEECCCCCHHHHHHCC
T ss_conf 98987450789889989999989997599999999-679578--------------855999999988899999999748
Q ss_pred HHHHH---------------------HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECC-CCCCHHHH--HHHHHH
Q ss_conf 99987---------------------4101100012137688998999999986278078258-99889999--998864
Q gi|254780332|r 282 ISEQT---------------------EVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQT-GGISMSQL--ATRARR 337 (504)
Q Consensus 282 is~~s---------------------~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~-~~~ti~~I--~~~~r~ 337 (504)
T Consensus 79 Ig~~~Q~~~l~~~ltv~enl~~~~~~~~~~~~~l~~~~~~~~~~~v~~~l~~~~L~~~-~~~~~~~LSgGqkqrv~iA~a 157 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-ADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred CCEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCHH-HCCCHHHCCHHHHHHHHHHHH
T ss_conf 8545266676766979999999875155502443036649999999999987799726-558634599789999999999
Q ss_pred HCCCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 02244474677671353256644321137889999999999998827919997713822016899998401014324223
Q gi|254780332|r 338 LKRQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIE 417 (504)
Q Consensus 338 ~~~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IE 417 (504)
T Consensus 158 L~--~~P~lllLD-----EPt~g-LD--~~~~~~i~~ll~~l~~~~--tvi~isH----------------dl---~~~~ 206 (242)
T TIGR03411 158 LM--QDPKLLLLD-----EPVAG-MT--DEETEKTAELLKSLAGKH--SVVVVEH----------------DM---EFVR 206 (242)
T ss_pred HH--HCCCEEEEE-----CCCCC-CC--HHHHHHHHHHHHHHHCCC--EEEEEEC----------------CH---HHHH
T ss_conf 97--389989991-----86436-99--899999999999985799--7999978----------------59---9999
Q ss_pred HHCCEEEEEEC
Q ss_conf 31387889725
Q gi|254780332|r 418 QDADVVLFVIR 428 (504)
Q Consensus 418 qdAD~v~~l~R 428 (504)
T Consensus 207 ~~~drv~vl~~ 217 (242)
T TIGR03411 207 SIADKVTVLHQ 217 (242)
T ss_pred HHCCEEEEEEC
T ss_conf 97999999979