HHsearch alignment for GI: 254780332 and conserved domain: cd00046

>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.43  E-value=0.27  Score=29.36  Aligned_cols=136  Identities=23%  Similarity=0.214  Sum_probs=65.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC-CHHHHHHHHHHHHHH-HCCCCCCCCCCC
Q ss_conf             776213100276999999999985101112333332124797589995852-179998789999874-101100012137
Q gi|254780332|r  222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM-SSEQLATRIISEQTE-VPSSKIRRGELT  299 (504)
Q Consensus       222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM-s~~el~~R~is~~s~-I~~~~i~~g~l~  299 (504)
T Consensus         3 ~lv~~ptGsGKT~~~~~~~~~~~~~-------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~-~~~~~~~   68 (144)
T cd00046           3 VLLAAPTGSGKTLAALLPILELLDS-------------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVG-YLIGGTS   68 (144)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHH-------------CCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEE-EEECCCC
T ss_conf             9998899717999999999999975-------------6897699974679999999999999748871799-9961363


Q ss_pred             HHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6889989999999862780782589988999999886402-244474677671353256644321137889999999999
Q gi|254780332|r  300 RPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLK-RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKA  378 (504)
Q Consensus       300 ~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~-~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~  378 (504)
T Consensus        69 ~~~~~-----~~~~~~~~ilv-----~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~-----~~~~~~~~~~---  130 (144)
T cd00046          69 IKQQE-----KLLSGKTDIVV-----GTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF-----GLLGLKILLK---  130 (144)
T ss_pred             HHHHH-----HHHCCCCCEEE-----CCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCC-----HHHHHHHHHH---
T ss_conf             67789-----87458984998-----288999999973876555100999988887643796-----9999999996---


Q ss_pred             HHHHHCCCEEEEE
Q ss_conf             9988279199977
Q gi|254780332|r  379 LAKELNIPIIALS  391 (504)
Q Consensus       379 lA~e~~ipvi~ls  391 (504)
T Consensus       131 --~~~~~~~l~lS  141 (144)
T cd00046         131 --LPKDRQVLLLS  141 (144)
T ss_pred             --CCCCCCEEEEC
T ss_conf             --79999489982