HHsearch alignment for GI: 254780332 and conserved domain: cd00046
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.43 E-value=0.27 Score=29.36 Aligned_cols=136 Identities=23% Similarity=0.214 Sum_probs=65.0
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC-CHHHHHHHHHHHHHH-HCCCCCCCCCCC
Q ss_conf 776213100276999999999985101112333332124797589995852-179998789999874-101100012137
Q gi|254780332|r 222 IIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM-SSEQLATRIISEQTE-VPSSKIRRGELT 299 (504)
Q Consensus 222 ~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM-s~~el~~R~is~~s~-I~~~~i~~g~l~ 299 (504)
T Consensus 3 ~lv~~ptGsGKT~~~~~~~~~~~~~-------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~-~~~~~~~ 68 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDS-------------LKGGQVLVLAPTRELANQVAERLKELFGEGIKVG-YLIGGTS 68 (144)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHH-------------CCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEE-EEECCCC
T ss_conf 9998899717999999999999975-------------6897699974679999999999999748871799-9961363
Q ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6889989999999862780782589988999999886402-244474677671353256644321137889999999999
Q gi|254780332|r 300 RPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRARRLK-RQRGLDLLIVDYIQLMTTSKKIEENRVLEITGITMALKA 378 (504)
Q Consensus 300 ~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~-~~~gi~~vvIDYLqli~~~~~~~~~r~~~i~~is~~lK~ 378 (504)
T Consensus 69 ~~~~~-----~~~~~~~~ilv-----~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~-----~~~~~~~~~~--- 130 (144)
T cd00046 69 IKQQE-----KLLSGKTDIVV-----GTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF-----GLLGLKILLK--- 130 (144)
T ss_pred HHHHH-----HHHCCCCCEEE-----CCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCC-----HHHHHHHHHH---
T ss_conf 67789-----87458984998-----288999999973876555100999988887643796-----9999999996---
Q ss_pred HHHHHCCCEEEEE
Q ss_conf 9988279199977
Q gi|254780332|r 379 LAKELNIPIIALS 391 (504)
Q Consensus 379 lA~e~~ipvi~ls 391 (504)
T Consensus 131 --~~~~~~~l~lS 141 (144)
T cd00046 131 --LPKDRQVLLLS 141 (144)
T ss_pred --CCCCCCEEEEC
T ss_conf --79999489982