HHsearch alignment for GI: 254780332 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.43 E-value=7.4e-12 Score=109.74 Aligned_cols=162 Identities=29% Similarity=0.386 Sum_probs=116.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 67762131002769999999999851011123333321247975899958521799987899998741011000121376
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIISEQTEVPSSKIRRGELTR 300 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R~is~~s~I~~~~i~~g~l~~ 300 (504)
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~---------------~~~~~~~~~~ee~~~q~~~~~~~~~~~~~----------- 54 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---------------KGGKVVYVDIEEEIEELTERLIGESLKGA----------- 54 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCCCHHHHHHHHHHHHCCCC-----------
T ss_conf 9899989999899999999999876---------------39979999866644899999998622467-----------
Q ss_pred HHHHHHHHHHHHHHHCCEEE-ECCCCCC-HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCC-CCCCHHHHHHHHHHHHHH
Q ss_conf 88998999999986278078-2589988-99999988640224447467767135325664-432113788999999999
Q gi|254780332|r 301 PDYEKIVACSQVMQKLPLYI-DQTGGIS-MSQLATRARRLKRQRGLDLLIVDYIQLMTTSK-KIEENRVLEITGITMALK 377 (504)
Q Consensus 301 ~e~~~i~~a~~~l~~~~l~I-~d~~~~t-i~~I~~~~r~~~~~~gi~~vvIDYLqli~~~~-~~~~~r~~~i~~is~~lK 377 (504)
T Consensus 55 ------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiiDSit~~~~a~~e~~~g~~~~v~~~~~~L~ 120 (165)
T cd01120 55 ------------L--DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELL 120 (165)
T ss_pred ------------C--CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf ------------1--30799935999769999999999999869977999928899887740015886789999999999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEC
Q ss_conf 999882791999771382201689999840101432422331387889725
Q gi|254780332|r 378 ALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVIR 428 (504)
Q Consensus 378 ~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R 428 (504)
T Consensus 121 ~~Ak~~~itvi~i~~v~~d~~~~----~~--~~~g~~~l~~~~d~~i~L~r 165 (165)
T cd01120 121 ERARKGGVTVIFTLQVPSGDKGD----PR--LTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred HHHHCCCCEEEEEEEEECCCCCC----CC--CCCHHHHHHHHCCEEEEEEC
T ss_conf 99977982899999843377899----77--25388888364266999839