HHsearch alignment for GI: 254780332 and conserved domain: cd01133
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.37 E-value=0.031 Score=36.46 Aligned_cols=44 Identities=32% Similarity=0.461 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 432101377655641677267762131002769999999999851
Q gi|254780332|r 202 VSTGIQTLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADA 246 (504)
Q Consensus 202 i~TG~~~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~ 246 (504)
T Consensus 53 l~TGIr~ID~l~p-igkGQR~~I~~~~g~GKt~ll~~ii~~~~~~ 96 (274)
T cd01133 53 LETGIKVIDLLAP-YAKGGKIGLFGGAGVGKTVLIMELINNIAKA 96 (274)
T ss_pred CCCCCEEEECCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 1158666644466-1478577875799998236899999999850