HHsearch alignment for GI: 254780332 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.56 E-value=1.3e-12 Score=115.49 Aligned_cols=215 Identities=19% Similarity=0.236 Sum_probs=137.9
Q ss_pred CCCCCHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 432101377655-6416772677621310027699999999998510111233333212479758999585217999878
Q gi|254780332|r 202 VSTGIQTLDKQM-GGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATR 280 (504)
Q Consensus 202 i~TG~~~LD~~~-gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEMs~~el~~R 280 (504)
T Consensus 1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~---------~~~~g~vvyIDtE~~f~--~~r 69 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGEL---------GGLEGKVVYIDTEGAFR--PER 69 (226)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC---------CCCCCEEEEEECCCCCC--HHH
T ss_conf 9887478998857998888399999999998999999999998542211---------69996199995577531--999
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH---HHCCCCCCCEEEECCHHHCCC
Q ss_conf 99998741011000121376889989999999862780782589988999999886---402244474677671353256
Q gi|254780332|r 281 IISEQTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQLATRAR---RLKRQRGLDLLIVDYIQLMTT 357 (504)
Q Consensus 281 ~is~~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r---~~~~~~gi~~vvIDYLqli~~ 357 (504)
T Consensus 70 l~~i~~~~~--------~~~---------~~~l--~~i~~~~~~--~~e~~~~~~~~l~~~~~~~~v~liViDSi~al~r 128 (226)
T cd01393 70 LVQLAVRFG--------LDP---------EEVL--DNIYVARPY--NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFR 128 (226)
T ss_pred HHHHHHHHC--------CCH---------HHHH--HHEEEECCC--CHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECC
T ss_conf 999987603--------266---------7764--333684379--9999999999999875247842899932200111
Q ss_pred CC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCCCCCCCCCCCCCHHHHHCCEEEEEECHHH
Q ss_conf 64----43211378899999999999988279199977138220168--9999840101432422331387889725566
Q gi|254780332|r 358 SK----KIEENRVLEITGITMALKALAKELNIPIIALSQLSRQVENR--DNKRPQLSDLRESGSIEQDADVVLFVIRDEY 431 (504)
Q Consensus 358 ~~----~~~~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r--~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~ 431 (504)
T Consensus 129 ~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avv~tNQv~~~i~~~~~~~~~p~-----gG~~w~~~~~~Ri~l~k~~~ 203 (226)
T cd01393 129 KEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVMFGDPETPA-----GGNALAHASTTRLDLRKGRG 203 (226)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEECCCCCCCCCCCCC-----CHHHHHHHCEEEEEEEECCC
T ss_conf 4442762078999999999999999999849799996811781578789988787-----63664600269999996688
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEE
Q ss_conf 1644233332221110000001123388389999740899725999
Q gi|254780332|r 432 YIRNKEPTNKDDILAYTKWQEDLKRVKGIADIIIAKQRHGPTGTVT 477 (504)
Q Consensus 432 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elivaKnR~G~~g~~~ 477 (504)
T Consensus 204 ----~--------------------~~~~r~~~~~k~p~~p~~~~~ 225 (226)
T cd01393 204 ----I--------------------IGERRIAKVVKSPALPEAEAE 225 (226)
T ss_pred ----C--------------------CCCEEEEEEEECCCCCCCCCC
T ss_conf ----8--------------------788799999989899876687