HHsearch alignment for GI: 254780332 and conserved domain: cd02035
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.12 E-value=0.00075 Score=48.80 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=32.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 6776213100276999999999985101112333332124797589995852
Q gi|254780332|r 221 LIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEM 272 (504)
Q Consensus 221 l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSlEM 272 (504)
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~---------------~G~rvLlvs~DP 37 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAE---------------EGKKVLLVSTDP 37 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH---------------CCCEEEEEECCC
T ss_conf 9899789966199999999999996---------------899499995898