HHsearch alignment for GI: 254780332 and conserved domain: cd03214
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.36 E-value=0.0016 Score=46.24 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=76.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC---CCCHHHHHHHHHHH
Q ss_conf 377655641677267762131002769999999999851011123333321247975899958---52179998789999
Q gi|254780332|r 208 TLDKQMGGLQRSDLIIIAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSL---EMSSEQLATRIISE 284 (504)
Q Consensus 208 ~LD~~~gGl~~G~l~Viaarpg~GKTalalniA~~~A~~~~~~~~~~~~~~~~~g~~Vl~fSl---EMs~~el~~R~is~ 284 (504)
T Consensus 14 il~~is~~i~~Ge~~~liG~nGsGKTTLl~~i~G-~~~--------------~~~G~I~~~g~~i~~~~~~~~~~~i-~~ 77 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG-LLK--------------PSSGEILLDGKDLASLSPKELARKI-AY 77 (180)
T ss_pred EEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCC--------------CCCCEEEECCEECCCCCHHHHHCCC-CH
T ss_conf 8804377886997999998999889999999957-989--------------9872899999998969999995546-49
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCHHH--HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCC
Q ss_conf 8741011000121376889989999999862780782589988999--99988640224447467767135325664432
Q gi|254780332|r 285 QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYIDQTGGISMSQ--LATRARRLKRQRGLDLLIVDYIQLMTTSKKIE 362 (504)
Q Consensus 285 ~s~I~~~~i~~g~l~~~e~~~i~~a~~~l~~~~l~I~d~~~~ti~~--I~~~~r~~~~~~gi~~vvIDYLqli~~~~~~~ 362 (504)
T Consensus 78 v~---------------------Q~l~~~~l~~~~~~~~~~LSGGqkQrv~iA~aL~--~~P~ililD-----EPts~-L 128 (180)
T cd03214 78 VP---------------------QALELLGLAHLADRPFNELSGGERQRVLLARALA--QEPPILLLD-----EPTSH-L 128 (180)
T ss_pred HH---------------------HHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHH--HCCCEEEEC-----CCCCC-C
T ss_conf 99---------------------9999859977864991037999999999999998--689647885-----87544-7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
Q ss_conf 11378899999999999988279199977138220168999984010143242233138788972
Q gi|254780332|r 363 ENRVLEITGITMALKALAKELNIPIIALSQLSRQVENRDNKRPQLSDLRESGSIEQDADVVLFVI 427 (504)
Q Consensus 363 ~~r~~~i~~is~~lK~lA~e~~ipvi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 427 (504)
T Consensus 129 D--~~~~~~i~~~i~~l~~~~~~tii~itH----------------d---l~~~~~~~d~i~vm~ 172 (180)
T cd03214 129 D--IAHQIELLELLRRLARERGKTVVMVLH----------------D---LNLAARYADRVILLK 172 (180)
T ss_pred C--HHHHHHHHHHHHHHHHHCCCEEEEEEC----------------C---HHHHHHHCCEEEEEE
T ss_conf 9--999999999999999846989999907----------------9---899999799999997